Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq810 116 2e-21
seq4488 114 7e-21
seq16196 113 2e-20
seq14021 111 8e-20
seq9304 111 8e-20
seq1099 107 1e-18
>seq810
Length=1836709
Score = 116 bits (128), Expect = 2e-21
Identities = 83/95 (87%), Gaps = 1/95 (1%)
Strand=Plus/Plus
Query 11436 GAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494
|||||| | ||||||| | |||||||||| |||||||||| |||||||||||||||
Sbjct 589032 GAATTACAAAAAAAATACACCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 589091
Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||| ||||||||||||||||||||
Sbjct 589092 TAGCACGATGCTCTAACCAACTGAGCTAATGGGCC 589126
>seq4488
Length=321039
Score = 114 bits (126), Expect = 7e-21
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 273451 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAT 273508
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 273509 GCTCTAACCAACTGAGCTAATGGGCC 273534
Score = 114 bits (126), Expect = 7e-21
Identities = 77/86 (90%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
||||||| | ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 279431 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAT 279488
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| ||||||||||||||||||||
Sbjct 279489 GCTCTAACCAACTGAGCTAATGGGCC 279514
>seq16196
Length=334733
Score = 113 bits (124), Expect = 2e-20
Identities = 76/85 (89%), Gaps = 3/85 (4%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| |||||||||||| |||||||||| |||||||||||||||||||||| ||
Sbjct 232774 AAAAAT---ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCG 232718
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 232717 CTCTAACCAACTGAGCTAATGGGCC 232693
>seq14021
Length=196696
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||
Sbjct 195137 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 195196
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 195197 CTGAGCTAATGGGCC 195211
>seq9304
Length=329732
Score = 111 bits (122), Expect = 8e-20
Identities = 76/85 (89%), Gaps = 1/85 (1%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| |
Sbjct 166786 AAAAAACAT-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATG 166844
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| ||||||||||||||||||||
Sbjct 166845 CTCTAACCAACTGAGCTAATGGGCC 166869
>seq1099
Length=1831544
Score = 107 bits (118), Expect = 1e-18
Identities = 79/89 (89%), Gaps = 4/89 (4%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG- 11501
|||||| |||| ||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1641702 AAAAAA--AAATATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGT 1641645
Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530
||||||| |||||||||||||||||||||
Sbjct 1641644 ACGCTCTAACCAACTGAGCTAATGGGCCG 1641616
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260893298001436
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |