Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq810 116 2e-21 seq4488 114 7e-21 seq16196 113 2e-20 seq14021 111 8e-20 seq9304 111 8e-20 seq1099 107 1e-18 >seq810 Length=1836709 Score = 116 bits (128), Expect = 2e-21 Identities = 83/95 (87%), Gaps = 1/95 (1%) Strand=Plus/Plus Query 11436 GAATTA-ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||||| | ||||||| | |||||||||| |||||||||| ||||||||||||||| Sbjct 589032 GAATTACAAAAAAAATACACCTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTAT 589091 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||| |||||||||||||||||||| Sbjct 589092 TAGCACGATGCTCTAACCAACTGAGCTAATGGGCC 589126 >seq4488 Length=321039 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 273451 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAT 273508 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 273509 GCTCTAACCAACTGAGCTAATGGGCC 273534 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| Sbjct 279431 AAAAAAT--ATTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGAT 279488 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 279489 GCTCTAACCAACTGAGCTAATGGGCC 279514 >seq16196 Length=334733 Score = 113 bits (124), Expect = 2e-20 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| |||||||||||| |||||||||| |||||||||||||||||||||| || Sbjct 232774 AAAAAT---ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGCCG 232718 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 232717 CTCTAACCAACTGAGCTAATGGGCC 232693 >seq14021 Length=196696 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 195137 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 195196 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 195197 CTGAGCTAATGGGCC 195211 >seq9304 Length=329732 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| || ||||||||||| |||||||||| ||||||||||||||||||||||| | Sbjct 166786 AAAAAACAT-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGATG 166844 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 166845 CTCTAACCAACTGAGCTAATGGGCC 166869 >seq1099 Length=1831544 Score = 107 bits (118), Expect = 1e-18 Identities = 79/89 (89%), Gaps = 4/89 (4%) Strand=Plus/Minus Query 11444 AAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG- 11501 |||||| |||| ||||||||| |||||||||| |||||||||||||||||||||| Sbjct 1641702 AAAAAA--AAATATGGCCCATGGGGGGATCGAACCCACGACCTTCGCGTTATTAGCACGT 1641645 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| ||||||||||||||||||||| Sbjct 1641644 ACGCTCTAACCAACTGAGCTAATGGGCCG 1641616 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260893298001436