Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq731 194 2e-44
seq967 105 8e-18
>seq731
Length=568950
Score = 194 bits (214), Expect = 2e-44
Identities = 209/275 (76%), Gaps = 4/275 (1%)
Strand=Plus/Plus
Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302
||| || || ||| || ||| ||||| |||||| || || |||||||| | |||||
Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545
Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362
|| |||||| ||| | | ||| ||||| || | |||||| ||||| ||||| |||||
Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605
Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422
| || ||||||||||||||||| ||||| | ||||||||||||||||||||||| ||
Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665
Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62480
||| ||||| || ||||||||||| | | |||| ||||| || ||| ||||| |
Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723
Query 62481 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515
||||| |||||| | || ||||| ||| | |||
Sbjct 414724 ATTTTTGCTTTTAATGTTTTCCAATCCCATAAATC 414758
Score = 125 bits (138), Expect = 9e-24
Identities = 221/315 (70%), Gaps = 8/315 (3%)
Strand=Plus/Plus
Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341
|| |||||||| ||||||||||| | || | | |||||| | |||||| ||||| |
Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954
Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401
||||| || | |||| || | ||| ||||| || ||||| | |||| || || |||
Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014
Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461
||||| ||||| | ||| ||||| | ||| || |||| |||| ||||| || ||| |
Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072
Query 63462 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518
| || || || |||||| | || | | || || || || || ||| ||||
Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTA 416131
Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTT 63577
|| | ||| || |||||| || | ||| || || || ||||||||||| || ||||
Sbjct 416132 ATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTT 416191
Query 63578 AAGTAGAAAACAGCT 63592
|| || |||||| ||
Sbjct 416192 AA-TAAAAAACAACT 416205
Score = 109 bits (120), Expect = 7e-19
Identities = 262/392 (67%), Gaps = 16/392 (4%)
Strand=Plus/Plus
Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796
|||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| |
Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239
Query 62797 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62853
|| |||| ||| | | ||| | | |||||| |||| | || || || ||
Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296
Query 62854 GAAAATCAAATCGCCCATCTAT-------TACAAACATGTTCAAGGCAACAGATGCCAGA 62906
|||||||| || || || ||| ||||||||| || | |||| || || | |
Sbjct 415297 GAAAATCATATGTCCTAT-TATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355
Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966
|| || || || | ||||| | | | ||| | || || ||||| || | |||||||
Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415
Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026
|||||||| ||||| ||||||| ||||| || || || ||| ||||||||
Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475
Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63086
|| | ||||| || ||||||| || | | | ||| ||| |||| | ||| |||
Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCT 415535
Query 63087 TTTATTATAGATTTGTATCTCCTTTCTCTTTC 63118
| ||| | ||| ||| | |||||| |||
Sbjct 415536 TGAATTTGACGTTTATATAT--TTTCTCATTC 415565
Score = 89.7 bits (98), Expect = 6e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
||| || || || |||||||||| | | |||||| |||| | |||||||| ||
Sbjct 415648 TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGACACATTAAACT 415707
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256
||| | | | | || | |||||||||||||| |||||||| ||||| | ||| |||
Sbjct 415708 CCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAAAA 415767
Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293
|| ||||| | ||||| ||| || || |||||| ||
Sbjct 415768 TAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629
|||| ||| || || |||| |||| || |||||| || ||||| || || ||||| ||
Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993
Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 62689
|| |||||| | ||||| || |||| |||| || | ||||| || || |||||
Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053
Query 62690 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740
|||||| | | || ||| || || || | |||||||| ||||||||
Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104
Score = 87.8 bits (96), Expect = 2e-12
Identities = 181/269 (67%), Gaps = 8/269 (3%)
Strand=Plus/Plus
Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650
||||||||||| || | |||| | ||| ||| | || ||||| || || |||||
Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328
Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63706
| ||| || | | ||| || || || ||| || ||||| || |||| ||||
Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388
Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766
| ||||| || | ||||||||| || || ||||||||||| | || | |||
Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444
Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826
||| | ||||| |||| | ||||| |||||||||||||| || |||||||
Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504
Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTAT 63855
|| ||||| || | ||||| | ||||
Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533
>seq967
Length=1612715
Score = 105 bits (116), Expect = 8e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849
||||| | || |||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890
Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897
|| |||||| |||| || || |||| |||||| ||| |||||||
Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTT 652842
Score = 91.5 bits (100), Expect = 2e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 33101 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160
|| ||| |||| | | || ||||| || ||||||||| || || ||||| ||||||
Sbjct 653895 TACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATT 653836
Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220
||| | || || ||||| ||||| | || ||| || | ||| | || | |||||
Sbjct 653835 GGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATT 653776
Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT 33280
|||||||||| || |||||| | ||||| ||| | || || | ||| |
Sbjct 653775 CTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTT 653716
Query 33281 GCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328
| | | ||||| ||||| ||||||||||||||||| || | ||||
Sbjct 653715 GTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668
Score = 89.7 bits (98), Expect = 6e-13
Identities = 157/228 (69%), Gaps = 3/228 (1%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
||||||||||| ||| ||||| || ||| || ||||| |||||||| || | || |
Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| | ||| || ||| |||||| || |||||||| |||||||| |
Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440
Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502
||| | | ||| | | || || || || ||||| ||| ||||| | |
Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380
Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550
| |||||| ||||| |||| |||| || || ||||| | | |||
Sbjct 653379 CTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAAAAGT 653332
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 621486303160760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |