Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq731 194 2e-44 seq967 105 8e-18 >seq731 Length=568950 Score = 194 bits (214), Expect = 2e-44 Identities = 209/275 (76%), Gaps = 4/275 (1%) Strand=Plus/Plus Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302 ||| || || ||| || ||| ||||| |||||| || || |||||||| | ||||| Sbjct 414486 CTGGATAGAACCATTATTTGCTATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCT 414545 Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362 || |||||| ||| | | ||| ||||| || | |||||| ||||| ||||| ||||| Sbjct 414546 TTCAGTTAAATCTCGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCT 414605 Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422 | || ||||||||||||||||| ||||| | ||||||||||||||||||||||| || Sbjct 414606 TCTTGTATAAATATTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGC 414665 Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG-- 62480 ||| ||||| || ||||||||||| | | |||| ||||| || ||| ||||| | Sbjct 414666 AGTAGATGCTGTTGGCATAGGTGCAATTAGTAAAGAATTTCGAATACC--ATGTTTAGCA 414723 Query 62481 ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATC 62515 ||||| |||||| | || ||||| ||| | ||| Sbjct 414724 ATTTTTGCTTTTAATGTTTTCCAATCCCATAAATC 414758 Score = 125 bits (138), Expect = 9e-24 Identities = 221/315 (70%), Gaps = 8/315 (3%) Strand=Plus/Plus Query 63282 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63341 || |||||||| ||||||||||| | || | | |||||| | |||||| ||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 63342 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63401 ||||| || | |||| || | ||| ||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 63402 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63461 ||||| ||||| | ||| ||||| | ||| || |||| |||| ||||| || ||| | Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACC--AGCTATTG 416072 Query 63462 --CTTCCACTGGCACGAATATTA-CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAG 63518 | || || || |||||| | || | | || || || || || ||| |||| Sbjct 416073 GTGTACCTCTTGCTCGAATACAATGTACATTA-AGTCCAATACCACCAGCCGATTTACTA 416131 Query 63519 ATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCA-TGTT 63577 || | ||| || |||||| || | ||| || || || ||||||||||| || |||| Sbjct 416132 ATAAGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTT 416191 Query 63578 AAGTAGAAAACAGCT 63592 || || |||||| || Sbjct 416192 AA-TAAAAAACAACT 416205 Score = 109 bits (120), Expect = 7e-19 Identities = 262/392 (67%), Gaps = 16/392 (4%) Strand=Plus/Plus Query 62737 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62796 |||| |||||||||||| | ||| || | || || |||| ||| ||||||||||| | Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTTGCCTCTGAAATCGGATAATAATTGA 415239 Query 62797 TATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 || |||| ||| | | ||| | | |||||| |||| | || || || || Sbjct 415240 CGTCGATAACTTTGTCTAAATTACGCGTAACAATT--TTTGTC-ACTTCTCGAAGCTTTT 415296 Query 62854 GAAAATCAAATCGCCCATCTAT-------TACAAACATGTTCAAGGCAACAGATGCCAGA 62906 |||||||| || || || ||| ||||||||| || | |||| || || | | Sbjct 415297 GAAAATCATATGTCCTAT-TATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAA 415355 Query 62907 TTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTA 62966 || || || || | ||||| | | | ||| | || || ||||| || | ||||||| Sbjct 415356 TTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTA 415415 Query 62967 CACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGA 63026 |||||||| ||||| ||||||| ||||| || || || ||| |||||||| Sbjct 415416 CACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGC 415475 Query 63027 ATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCC 63086 || | ||||| || ||||||| || | | | ||| ||| |||| | ||| ||| Sbjct 415476 ATATAAGGAGTTCCTGTTTCAACTTGGGCAACAAGAATAGCTGTCCATAATTCTCTAGCT 415535 Query 63087 TTTATTATAGATTTGTATCTCCTTTCTCTTTC 63118 | ||| | ||| ||| | |||||| ||| Sbjct 415536 TGAATTTGACGTTTATATAT--TTTCTCATTC 415565 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||| || || || |||||||||| | | |||||| |||| | |||||||| || Sbjct 415648 TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGACACATTAAACT 415707 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| | | | | || | |||||||||||||| |||||||| ||||| | ||| ||| Sbjct 415708 CCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATAAAGCATAAAA 415767 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 63293 || ||||| | ||||| ||| || || |||||| || Sbjct 415768 TAATTCTCTTGCTCTATTTTCTTCCTTACCTGTAGTC 415804 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGC 62629 |||| ||| || || |||| |||| || |||||| || ||||| || || ||||| || Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993 Query 62630 ACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAA 62689 || |||||| | ||||| || |||| |||| || | ||||| || || ||||| Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053 Query 62690 TGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 |||||| | | || ||| || || || | |||||||| |||||||| Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104 Score = 87.8 bits (96), Expect = 2e-12 Identities = 181/269 (67%), Gaps = 8/269 (3%) Strand=Plus/Plus Query 63591 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63650 ||||||||||| || | |||| | ||| ||| | || ||||| || || ||||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 63651 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATC----CCATTGATG 63706 | ||| || | | ||| || || || ||| || ||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 63707 AATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTAT 63766 | ||||| || | ||||||||| || || ||||||||||| | || | ||| Sbjct 416389 ----GCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 63767 TTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCG 63826 ||| | ||||| |||| | ||||| |||||||||||||| || ||||||| Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 63827 TTCGTAAATAATAACCGAGTTGAGTTTAT 63855 || ||||| || | ||||| | |||| Sbjct 416505 ATCATAAATTATTGCAGAGTTTAACTTAT 416533 >seq967 Length=1612715 Score = 105 bits (116), Expect = 8e-18 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 33790 TTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTC 33849 ||||| | || |||||||||||||||||||| |||||||| || ||||||||||| ||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 33850 CAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 || |||||| |||| || || |||| |||||| ||| ||||||| Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTT 652842 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33101 TATAAAtttttttAAATCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATG 33160 || ||| |||| | | || ||||| || ||||||||| || || ||||| |||||| Sbjct 653895 TACAAACCTTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATT 653836 Query 33161 TTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATT 33220 ||| | || || ||||| ||||| | || ||| || | ||| | || | ||||| Sbjct 653835 GGCACATAAGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATT 653776 Query 33221 CTTGTTCAATGGATACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGAT 33280 |||||||||| || |||||| | ||||| ||| | || || | ||| | Sbjct 653775 CTTGTTCAATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTT 653716 Query 33281 GCAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCT 33328 | | | ||||| ||||| ||||||||||||||||| || | |||| Sbjct 653715 GTATAATGTGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/228 (69%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 ||||||||||| ||| ||||| || ||| || ||||| |||||||| || | || | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| | ||| || ||| |||||| || |||||||| |||||||| | Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 33446 CAATAAGTCTCTCTCCATAACCGGCGCTGTCATG---TATCCACTTTTGAGCCCAATCGG 33502 ||| | | ||| | | || || || || ||||| ||| ||||| | | Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380 Query 33503 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGT 33550 | |||||| ||||| |||| |||| || || ||||| | | ||| Sbjct 653379 CTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAACAAAAAGT 653332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621486303160760