Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq967 158 1e-33 seq140 125 8e-24 seq3043 113 5e-20 >seq967 Length=1612715 Score = 158 bits (174), Expect = 1e-33 Identities = 147/187 (79%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 93362 ATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGG 93421 || ||||| || || || | |||||||||||| ||||| ||||| ||||| |||| ||| Sbjct 653242 ATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACATTTTCCATGGCAACTTGA 653183 Query 93422 AATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGA 93481 || || || ||||| | || || || | ||| ||||||||| ||||| || || ||| Sbjct 653182 AAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGACTAAATCGTTCAACAAGA 653123 Query 93482 TTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGT 93541 |||||||| ||||| ||||| || || |||||||| || |||| ||| |||||||||| Sbjct 653122 TTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAATACATGAGATATAAAATGT 653063 Query 93542 TTCTCAT 93548 ||||||| Sbjct 653062 TTCTCAT 653056 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || || || |||||||| || |||||||| ||||| || |||||||| ||||||| | Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAAC 93700 || ||||| | ||||||| ||||| | ||||| | | || || ||||||||||| Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTTTCTTTTAGTAAT 652830 Query 93701 GGCTCTAGTTGTGGGTCAAA 93720 || |||| || ||| | ||| Sbjct 652829 GGTTCTAATTCTGGATTAAA 652810 >seq140 Length=159078 Score = 125 bits (138), Expect = 8e-24 Identities = 81/88 (92%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 8520 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTAGGGAGC 8461 Query 126323 GTGGGTTCGAACCCCACACCTGACAAAT 126350 |||||||||||||||||||||| ||||| Sbjct 8460 GTGGGTTCGAACCCCACACCTGGCAAAT 8433 Score = 123 bits (136), Expect = 3e-23 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 || ||||||||||||| |||||||||||||||||||||| |||||||||| | |||||| Sbjct 10373 AGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCAGTAGGGAGC 10432 Query 126323 GTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||| |||| Sbjct 10433 GTGGGTTCGAACCCCACACCTGGCAAA 10459 >seq3043 Length=1147666 Score = 113 bits (124), Expect = 5e-20 Identities = 80/91 (88%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126269 AGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCGTGG 126326 |||||||||||| |||||||||||||||||||||| |||||||||| | |||||||||| Sbjct 249569 AGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCATTTGGGAGCGTGG 249628 Query 126327 GTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||| | |||| ||| || Sbjct 249629 GTTCGAACCCCACACTTAGCAAAAAATTTTT 249659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555554884855640