Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5459 100 2e-16 seq4862 91.5 1e-13 >seq5459 Length=1306269 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || | || || |||||||| ||| |||| ||||| | Sbjct 706102 AATGCAAATCTTTGTAAAGACCCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCTTC 706043 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| ||| || || ||||| || | ||| | |||| Sbjct 706042 TGATACAATAGAGAATGTGAAGGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCA 705983 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| |||||||| || |||| | | ||||| || Sbjct 705982 GCAGCGCTTGATCTTTGCTGGCAAACAGTTAGAAGATGGAAGAACTCTTTCAGATTATAA 705923 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| || || || ||| ||||||| Sbjct 705922 CATTCAGAAGGAGTCAACACTACATTTGGTATT 705890 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | |||||| | || || |||||||| ||| ||||| ||||| | Sbjct 721310 AATGCAAATCTTTGTGAAAACACTGACAGGGAAAACCATCACCTTGGAAGTAGAAGCTTC 721251 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || || || ||||| || || | ||| | || Sbjct 721250 TGACACAATAGAGAATGTGAAAGCTAAGATACAAGATAAGGAAGGAATCCCTCCTGATCA 721191 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | ||||||||||||||||| ||||||||| || ||| | |||||||| Sbjct 721190 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACACTTTTGGATTACAA 721131 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||| ||||||||||| ||||| || |||| ||| | | || ||||| Sbjct 721130 TATCCAGAAGGAATCCACTCTCCACCTGGTGTTAAGACTTCGTGGAGG 721083 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || || |||||||||||| |||| ||||| | Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| || ||||| || | ||| | |||| Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||||||| |||||||| | ||| | | ||||| || Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 || |||||||| || || || ||| ||||||| Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATT 706346 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | |||||| | | || |||||||| ||| |||| ||||| | Sbjct 709875 AATGCAAATCTTTGTCAAAACACTGTCAGGAAAAACCATCACCTTGGAGGTAGAAGCTTC 709816 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| || ||||| || | ||||| |||| Sbjct 709815 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGATGGAATCTCTGTAGACCA 709756 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||||||| | |||||| | |||| | | ||||| || Sbjct 709755 GCAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTTCGGATTATAA 709696 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 ||||||||||| || || | ||| ||||||| Sbjct 709695 CATTCAGAAGGAGTCAACAATACATTTGGTATT 709663 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | || || |||||||||||| ||||| ||||| | Sbjct 706330 AATGCAAATCTTTGTCAAGACACTGACAGGAAAAACCATTACCTTGGAAGTAGAAGCTTC 706271 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| |||||| ||||| || || | || | || Sbjct 706270 TGATACAATAGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATTCCCCCTGATCA 706211 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | | ||||||||||| ||||| || |||||| | |||| || | ||||| || Sbjct 706210 GCAACGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGAGAACTTTGTCAGATTATAA 706151 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || |||||||| || ||||| || ||||| || | | |||||||| Sbjct 706150 CATCCAGAAGGAGTCAACTCTCCACTTGGTACTAAGGCTCAGAGGAGGA 706102 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| ||| | || || |||||||| ||| ||||| ||||| | Sbjct 705646 AATGCAAATCTTTGTTAAGACACTGACAGGAAAAACCATCACCTTGGAAGTAGAAGCTTC 705587 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || | | | || | || || || ||||| || || | || | || Sbjct 705586 TGACTCAATAGAGAATGTGAAAGCTAAGATACAAGATAAGGAAGGAATTCCCCCTGATCA 705527 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 || | | ||||||||||||||||| ||||||||| | ||| | | ||||| || Sbjct 705526 GCAACGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGGAGGACTCTTTCAGATTATAA 705467 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 |||||||||||||| ||||| ||| |||||||| Sbjct 705466 CATTCAGAAGGAATCAACTCTCCATTTGGTATTA 705433 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || ||| | | || || ||||| ||| |||| ||||| | Sbjct 710103 AATGCAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTGGAGGTAGAAGCTTC 710044 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || ||||| || |||||||| | ||| | |||| Sbjct 710043 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGAGGGAATCTCTGCAGACCA 709984 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||| | | |||||||||||||||||| |||||||| | |||| | | |||| || Sbjct 709983 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCAGATTCTAA 709924 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||||||||| || || | ||| | ||||| | | |||||||| Sbjct 709923 CATTCAGAAGGAGTCAACAATACATTTAGTATTGAGACTCAGAGGAGGA 709875 >seq4862 Length=216935 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || ||| | || || || || ||||| ||||| |||||| | Sbjct 39843 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCCTCT 39902 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| |||||| |||||||| ||| | || | ||| Sbjct 39903 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39962 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| |||||| |||||||| || | | || || ||| Sbjct 39963 CAAAGACTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACGCTTTCTGACTATAAT 40022 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||| || ||| | ||| | || | |||| ||| Sbjct 40023 ATTCAAAAAGAATCTACCCTCCATCTTGTACTTCGACTTAGAGGTGGA 40070 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||| || ||| ||||| ||||| | Sbjct 39387 ATGCAAATTTTTGTCAAGACTCTCACTGGAAAAACTATAACCCTGGAAGTTGAAGCATCG 39446 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | |||| |||||| |||||| || ||| | ||||| | Sbjct 39447 GACACAATTGAAAACGTTAAAGCTAAAATTCGCGATAAGGAAGGTATCCCACCTG---AT 39503 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| ||||||| || || |||| || Sbjct 39504 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTCGTACACTGACCGACTAT 39563 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||||||||| || ||| | ||| | || | ||||| || Sbjct 39564 AATATTCAAAAGGAATCTACGCTGCATCTTGTACTCCGACTTCGAGGTGG 39613 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||| || ||| ||||| ||||| | Sbjct 40983 ATGCAAATTTTTGTCAAGACTCTCACTGGGAAAACTATAACCCTGGAAGTTGAAGCATCG 41042 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || |||| |||||| ||||| || ||| | ||||| | Sbjct 41043 GACACAATTGAGAATGTTAAAGCTAAAATTCGTGATAAGGAAGGTATCCCACCTG---AT 41099 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||||| ||||||||||| |||||| | |||||| || | | ||||| Sbjct 41100 CAACAAAGACTGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACGCTTTCTGATTAT 41159 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||||||||| ||||| ||||| ||| | ||| Sbjct 41160 AATATTCAGAAAGAATCAACTCTGCATCTTGTA 41192 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || || || ||||| | ||| |||||| | Sbjct 39615 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 39674 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || |||| |||||| |||||||| ||| | || | ||| Sbjct 39675 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39734 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || ||||| ||||||||||| ||||| |||||||| || | | ||||| ||| Sbjct 39735 CAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTTCAGATTATAAT 39794 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTA 22043 ||||| || |||||||| || ||| | ||| Sbjct 39795 ATTCAAAAAGAATCTACCCTCCATCTTGTA 39824 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || ||||| || ||| ||||| ||||| | Sbjct 38247 ATGCAAATTTTTGTGAAGACTCTCACTGGGAAAACTATAACCTTGGAAGTTGAAGCTTCT 38306 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | | | ||| |||||| ||||| || ||| | ||||| | Sbjct 38307 GATACAATCGAGAACGTCAAGGCTAAAATTCAAGATAAGGAAGGTATTCCACCTG---AT 38363 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| || | | ||||| Sbjct 38364 CAACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTCGCACGCTTTCTGATTAT 38423 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||||||||| || ||| | ||| | || | ||||| || Sbjct 38424 AATATTCAAAAGGAATCTACGCTGCATCTTGTACTCCGACTTCGAGGTGG 38473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357305944399294