Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2849 102 9e-17 seq10217 100 3e-16 seq5459 93.3 5e-14 seq1421 93.3 5e-14 seq1099 93.3 5e-14 seq16196 91.5 2e-13 seq968 91.5 2e-13 seq396 91.5 2e-13 seq4862 87.8 2e-12 >seq2849 Length=1674049 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| ||| ||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 7276 AAATATTGTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 7335 Query 57058 TCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||| Sbjct 7336 TGACCACTATACTACCGAGGA 7356 >seq10217 Length=79343 Score = 100 bits (110), Expect = 3e-16 Identities = 73/84 (87%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 56998 AAAAATTT--TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| | ||||| |||| | |||||||||| ||||||||||||||||||||| || Sbjct 56334 AAAAATATAATCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 56393 Query 57056 ACTCACCACTATACTACCGAGGAT 57079 ||| |||||||||||||||||||| Sbjct 56394 ACTTACCACTATACTACCGAGGAT 56417 >seq5459 Length=1306269 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 41996 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 42055 ||| |||||||| | ||| |||||| ||||| || ||||| | ||||| | | || Sbjct 705889 CAATACCAAATGTAGTGTTGACTCCTTCTGAATGTTATAATCTGAAAGAGTTCTTCCATC 705948 Query 42056 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 |||| ||| || ||||| || || | ||||||||||| | || | | || ||||| Sbjct 705949 TTCTAACTGTTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGGATTCCTTCTTTGTC 706008 Query 42116 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 42175 ||| ||| || | || | | || || | ||| || || | |||||||| Sbjct 706009 TTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTACCTCCAAGGTGATGGT 706068 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||| || || || ||||||||||||||||||||| Sbjct 706069 TTTCCCTGTGAGGGTCTTTACAAAGATTTGCATT 706102 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 41997 AACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCA 42056 ||||| ||||| | ||| |||||||||||| || || || | ||||| | | || Sbjct 709435 AACACTAAATGGAGTGTTGACTCCTTTTGAATGTTATAGTCTGAAAGAGTTCTACCATCT 709494 Query 42057 TCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCC 42116 |||| ||| || ||||| || || | |||||| |||| | ||| | || |||||| Sbjct 709495 TCTAACTGTTTTCCAGCAAAGATCAAACGCTGCAGGTCAGGTGGGATTTCTTCTTTGTCC 709554 Query 42117 ATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTT 42176 |||||| ||| | || | | || || | || || || | |||||||| Sbjct 709555 TGGATTTTAGCTTTTAAATTCTCTATAGTATCAGAAGCATCTACCTCCAAAATGATGGTT 709614 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || || || ||||||||||||||||||||| Sbjct 709615 TTTCCAGTCAGTGTCTTTACAAAGATTTGCATT 709647 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | ||| || ||||| | ||| |||||| ||||| || |||| | Sbjct 709876 CCTCCTCTGAGTCTCAATACTAAATGTATTGTTGACTCCTTCTGAATGTTAGAATCTGAA 709935 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| | | | || |||| || || ||||| || || | ||||||||||| || | Sbjct 709936 AGAGTTCTCCCATCTTCTAATTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGCAGAG 709995 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| ||||| |||||| ||| | || | | || || | ||| || Sbjct 709996 ATTCCCTCTTTGTCTTGGATTTTAGCTTTTACATTCTCTATTGTATCAGAAGCTTCTACC 710055 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | |||||||| || || | || ||||| ||||||||||||||| Sbjct 710056 TCCAAGGTGATGGTCTTTCCTGACAGTGTCTTGACAAAGATTTGCATT 710103 >seq1421 Length=1888048 Score = 93.3 bits (102), Expect = 5e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| ||||| || Sbjct 973170 ATTCTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAAC 973111 Query 57062 CACTATACTACCGAGGATT 57080 |||||||||| |||||||| Sbjct 973110 CACTATACTAACGAGGATT 973092 >seq1099 Length=1831544 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 56998 AAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055 |||||| ||||||| || | | |||||||||| ||||||||||||||||||||| || Sbjct 1672653 AAAAATAATTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 1672594 Query 57056 ACTCACCACTATACTACCGAGGA 57078 ||| |||||||||||| |||||| Sbjct 1672593 ACTAACCACTATACTAACGAGGA 1672571 >seq16196 Length=334733 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 82776 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 82835 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 82836 ATACTAACGAGGATT 82850 >seq968 Length=1364020 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||| || |||||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 405655 AAATATATTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGGTAC 405714 Query 57058 TCACCACTATACTACCGAGGATTGAATATATA 57089 | |||||||||||| ||||||| ||| |||| Sbjct 405715 TAACCACTATACTATCGAGGAT--AATTTATA 405744 >seq396 Length=2168952 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1069382 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1069441 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 1069442 ATACTAACGAGGATT 1069456 >seq4862 Length=216935 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 || ||||||||||| ||||||| || || || | || |||||||| ||||| || ||| Sbjct 40489 TCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTACCGGCAAAT 40430 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || | || |||||| || | ||| | | ||||| | | ||| |||| | ||| | | Sbjct 40429 ATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTAT-CTTGAATTTTGGCTTTAACATT 40371 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | ||| || | ||| || |||| ||| || || || || || || ||||| || Sbjct 40370 TTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTCTTGAC 40311 Query 42197 AAAGATTTGCAT 42208 ||| |||||||| Sbjct 40310 AAAAATTTGCAT 40299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541938891292240