Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5459 89.7 4e-13 seq4862 87.8 1e-12 seq3181 86.0 4e-12 >seq5459 Length=1306269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCA 39564 || |||||| || | ||| || ||||| || |||||||| | ||| | | | || Sbjct 721325 CAATACCAAGTGGAGAGTTGACTCCTTTTGGATGTTATAATCTG--AAAGGGTTCTTCCA 721382 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || || ||||| || | || || ||||| |||||||| | || | ||||||||| Sbjct 721383 TCTTCTAACTGTTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCTTCTTTG 721442 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || ||||| ||| | | ||| |||||| | ||| || || ||||| || Sbjct 721443 TCTTGGATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACCTCTAAAGTGATG 721502 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 ||||| || ||||| || || || ||||||||||||| Sbjct 721503 GTTTTTCCTGTTAATGTCTTAACAAAGATCTGCATGT 721539 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCAT 39565 |||||||| || | ||| || || || || |||||||| | ||| | | | ||| Sbjct 706802 AGTACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAATCTG--AAAGGGTTCTTCCAT 706859 Query 39566 CGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGT 39625 | |||| |||||||| |||| || ||||| |||||||| | ||| | ||||| || | Sbjct 706860 CTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGGGAATTCCTTCCTTAT 706919 Query 39626 CGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685 | || ||| || | || ||| |||||| | ||| || ||||| || || | Sbjct 706920 CTTGGATCTTTGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACCTCCAAGGTGATGG 706979 Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 |||| || || | || || |||||||||||||||| Sbjct 706980 TTTTTCCTGTGAGGGTCTTAACGAAGATCTGCATGT 707015 >seq4862 Length=216935 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | || ||||| | ||| | || ||||||||| |||||||| |||| Sbjct 34598 CCACCTCGAAGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGG-- 34541 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 ||| || || |||| || |||||||| || |||| || || | || ||||| | | Sbjct 34540 AAAGCGTACGACCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTG 34481 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||||| || || ||||| ||||| | | | ||| |||| || | Sbjct 34480 GGATACCTTCCTTATCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCTGATGCCTCAA 34421 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721 | || | || |||||||| || || | |||||||||||||||||||||| Sbjct 34420 CCTCGAGGGTTATTGTTTTGCCTGTCAGTGTTTTTACGAAGATCTGCATGT 34370 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/238 (69%), Gaps = 5/238 (2%) Strand=Plus/Minus Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543 |||||||| || || || | || ||||| | ||||| ||| |||||| || |||||| Sbjct 41218 AATCATCGACCACCACGGAGTCGAAGTACAAGATGCAGAGTTGATTCTTTCTGAATATTA 41159 Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601 ||||| | ||| || || |||| ||||||||||| || |||| || | | || | Sbjct 41158 TAATCAG--AAAGCGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAGTCTTTGTT 41101 Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661 |||| | || | ||||| || || | ||||| ||||| || | | |||||| | Sbjct 41100 GATCAGGTGGGATACCTTCCTTATCACGAATTTTAGCTTTAACATTCTCAATTGTGTCCG 41041 Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || |||| || || ||||| || || | ||| || || || || ||||| Sbjct 41040 ATGCTTCAACTTCCAGGGTTATAGTTTTCCCAGTGAGAGTCTTGACAAAAATTTGCAT 40983 >seq3181 Length=1038259 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/199 (70%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589 ||||||| ||||| ||||| | || ||| |||| || ||||| || || |||||| Sbjct 489040 CTTTTTGAATATTGTAATCTGACAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 488981 Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649 | | ||| || ||||| | || | ||||||||| || ||||| ||| | | Sbjct 488980 TGAGACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTTT 488921 Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709 | | || |||| ||| || || | || || ||||||||||| |||||||| || | Sbjct 488920 CAATAGTATCTGATGATTCTACTTCAAGGGTGATGGTTTTACCCGTCAAAGTTTTCACAA 488861 Query 39710 AGATCTGCAT-GTCGTGTG 39727 | |||||||| || ||||| Sbjct 488860 ATATCTGCATCGTGGTGTG 488842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346575336261563