Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq5459 89.7 4e-13
seq4862 87.8 1e-12
seq3181 86.0 4e-12
>seq5459
Length=1306269
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/217 (70%), Gaps = 4/217 (2%)
Strand=Plus/Plus
Query 39507 CAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCA 39564
|| |||||| || | ||| || ||||| || |||||||| | ||| | | | ||
Sbjct 721325 CAATACCAAGTGGAGAGTTGACTCCTTTTGGATGTTATAATCTG--AAAGGGTTCTTCCA 721382
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || || ||||| || | || || ||||| |||||||| | || | |||||||||
Sbjct 721383 TCTTCTAACTGTTTGCCAGCGAAGATCAAACGTTGCTGATCAGGTGGGATTCCTTCTTTG 721442
Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684
|| ||||| ||| | | ||| |||||| | ||| || || ||||| ||
Sbjct 721443 TCTTGGATTTTAGCTTTTACATTTTCTATTGTGTCAGAAGCTTCAACCTCTAAAGTGATG 721502
Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721
||||| || ||||| || || || |||||||||||||
Sbjct 721503 GTTTTTCCTGTTAATGTCTTAACAAAGATCTGCATGT 721539
Score = 87.8 bits (96), Expect = 1e-12
Identities = 150/216 (69%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTTCAT 39565
|||||||| || | ||| || || || || |||||||| | ||| | | | |||
Sbjct 706802 AGTACCAAGTGGAGAGTTGACTCCTTCTGGATGTTATAATCTG--AAAGGGTTCTTCCAT 706859
Query 39566 CGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGT 39625
| |||| |||||||| |||| || ||||| |||||||| | ||| | ||||| || |
Sbjct 706860 CTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGATCAGGGGGAATTCCTTCCTTAT 706919
Query 39626 CGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTG 39685
| || ||| || | || ||| |||||| | ||| || ||||| || || |
Sbjct 706920 CTTGGATCTTTGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACCTCCAAGGTGATGG 706979
Query 39686 TTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721
|||| || || | || || ||||||||||||||||
Sbjct 706980 TTTTTCCTGTGAGGGTCTTAACGAAGATCTGCATGT 707015
>seq4862
Length=216935
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/231 (69%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| ||||| | || ||||| | ||| | || ||||||||| |||||||| ||||
Sbjct 34598 CCACCTCGAAGTCGGAGTACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGG-- 34541
Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610
||| || || |||| || |||||||| || |||| || || | || ||||| | |
Sbjct 34540 AAAGCGTACGACCATCTTCTAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTG 34481
Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670
| | ||||| || || ||||| ||||| | | | ||| |||| || |
Sbjct 34480 GGATACCTTCCTTATCTTGAATTTTAGCTTTAACGTTTTCAATTGTATCTGATGCCTCAA 34421
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGT 39721
| || | || |||||||| || || | ||||||||||||||||||||||
Sbjct 34420 CCTCGAGGGTTATTGTTTTGCCTGTCAGTGTTTTTACGAAGATCTGCATGT 34370
Score = 87.8 bits (96), Expect = 1e-12
Identities = 164/238 (69%), Gaps = 5/238 (2%)
Strand=Plus/Minus
Query 39485 AATCATCG-CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTA 39543
|||||||| || || || | || ||||| | ||||| ||| |||||| || ||||||
Sbjct 41218 AATCATCGACCACCACGGAGTCGAAGTACAAGATGCAGAGTTGATTCTTTCTGAATATTA 41159
Query 39544 TAATCGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCT 39601
||||| | ||| || || |||| ||||||||||| || |||| || | | || |
Sbjct 41158 TAATCAG--AAAGCGTACGGCCATCTTCCAATTGTTTTCCAGCAAAGATCAGTCTTTGTT 41101
Query 39602 GATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG 39661
|||| | || | ||||| || || | ||||| ||||| || | | |||||| |
Sbjct 41100 GATCAGGTGGGATACCTTCCTTATCACGAATTTTAGCTTTAACATTCTCAATTGTGTCCG 41041
Query 39662 CGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
||| || |||| || || ||||| || || | ||| || || || || |||||
Sbjct 41040 ATGCTTCAACTTCCAGGGTTATAGTTTTCCCAGTGAGAGTCTTGACAAAAATTTGCAT 40983
>seq3181
Length=1038259
Score = 86.0 bits (94), Expect = 4e-12
Identities = 139/199 (70%), Gaps = 1/199 (1%)
Strand=Plus/Minus
Query 39530 CTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAA 39589
||||||| ||||| ||||| | || ||| |||| || ||||| || || ||||||
Sbjct 489040 CTTTTTGAATATTGTAATCTGACAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 488981
Query 39590 TTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG 39649
| | ||| || ||||| | || | ||||||||| || ||||| ||| | |
Sbjct 488980 TGAGACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTTT 488921
Query 39650 CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGA 39709
| | || |||| ||| || || | || || ||||||||||| |||||||| || |
Sbjct 488920 CAATAGTATCTGATGATTCTACTTCAAGGGTGATGGTTTTACCCGTCAAAGTTTTCACAA 488861
Query 39710 AGATCTGCAT-GTCGTGTG 39727
| |||||||| || |||||
Sbjct 488860 ATATCTGCATCGTGGTGTG 488842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346575336261563
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |