Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5566 152 6e-32 >seq5566 Length=389603 Score = 152 bits (168), Expect = 6e-32 Identities = 276/393 (70%), Gaps = 8/393 (2%) Strand=Plus/Plus Query 154716 GTATGTTTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGG 154775 || |||||||| || || || ||||| |||||||||||| |||| ||||| || Sbjct 15953 GTCTGTTTGATTCCCATTTCTGCTCATGGTACTAATCCTGCTTCTGCTCAAATGGCCGGT 16012 Query 154776 ATGAAAGTTGTAGG-TGTCA-AGTGTGATGATGATGGTAACATAGACATCAAAGATCTAG 154833 ||| |||| | || | || |||| | | || ||| || ||||| | ||||| Sbjct 16013 ATGCAAGT-GAAGCCTATCTTAGTGC-AGAAAGACGGTTCTATGGACATTGCACATCTAA 16070 Query 154834 -AGAAGAAAGCAATCATGAATACATTTGA-ACTGTCATGTATTATGATTACATACCCATC 154891 |||| || ||| | | || || || |||||| ||| | ||||| ||||| ||||| Sbjct 16071 CAGAAACAATAAATAA-GCAT-CAGGAGACACTGTCTTGTTTGATGATAACATATCCATC 16128 Query 154892 TACACATGGTGTATTTGAAACTAACATTAGACAGATATGTAAGATCGTTCATGACAATGG 154951 || ||||||| |||||| | ||||| | || || | || |||||| | ||| Sbjct 16129 GACGAATGGTGTGTTTGAAGAAACGATTAGTGATATTTGCACTATAGTTCATAAAGTTGG 16188 Query 154952 TGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATG 155011 ||||| || ||| | |||||||| ||| | ||||| || || ||| || ||| | Sbjct 16189 AGGTCAAGTGTATTTAGATGGAGCTAATATGAATGCTCAAGTTGGATTATGTCGTCCAGG 16248 Query 155012 TGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGG 155071 ||| ||||| ||||| | ||||| || |||||||||||||||||||| || ||||| Sbjct 16249 TGATTATGGCAGTGATGTTTCACATCTGAATTTACATAAAACATTCTGTATACCTCATGG 16308 Query 155072 AGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||| ||||| | || ||||| || || Sbjct 16309 TGGTGGAGGGCCTGGAATGGGACCTATTGGAGT 16341 Score = 91.5 bits (100), Expect = 2e-13 Identities = 174/251 (69%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 153770 AAGGTTTGGTATTCCTA-TGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAG 153828 || |||| | | ||| | | ||||||||||| |||||||||| |||||||| Sbjct 14846 AACGTTTCGGAGTCCCACTTGGATATGGAGGACCTCATGCTGGGTTCTTTGCTTGTCGTA 14905 Query 153829 ACAAGTATAAGA--GAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAA-- 153884 | || || || | || ||||| ||||| || ||| || | | | | | || Sbjct 14906 AAAA--ATTAGTTCGTTTAATGCCTGGTAGAATGGTCGGT--GTTACGAAAGATTTAAAT 14961 Query 153885 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAA 153944 ||| | || || || | ||||| || || || | || ||||||||||| ||||||||| Sbjct 14962 GGTCAAAATGCGTATCGCTTAGCCCTTCAAACACGCGAACAGCATATCAGAAGAGACAAA 15021 Query 153945 GCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCA 154004 || || || || || || || || || ||||| || || |||||||||| | | ||||| Sbjct 15022 GCTACTAGCAATATTTGTACTGCACAAGCACTACTAGCAAATATGTCTGCAATGTATGCT 15081 Query 154005 GCATATCATGG 154015 | |||||||| Sbjct 15082 GTGTATCATGG 15092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577854466342240