Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq967 185 1e-41 seq731 181 1e-40 >seq967 Length=1612715 Score = 185 bits (204), Expect = 1e-41 Identities = 176/224 (79%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 19224 ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGC 19283 |||| ||| ||||| || ||||||||| |||||||||||||| | |||||| || || Sbjct 653249 ATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACATTTTCCATGGC 653190 Query 19284 CATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTC 19343 | ||||| || |||||||| | ||| ||||||| ||||||||| || ||||| ||| Sbjct 653189 AACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGACTAAATCGTTC 653130 Query 19344 GACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAAT 19403 || | |||||||||||||||||||||| ||| |||||||||||||||||||| || Sbjct 653129 AACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAATACATGAGATAT 653070 Query 19404 AAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAATAT 19447 ||||||||| |||| ||||| |||||| ||| ||||| Sbjct 653069 AAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCA--AATAT 653028 Score = 114 bits (126), Expect = 1e-20 Identities = 146/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||||||| || | ||||||| |||||| | || ||||| || |||||||| | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||||||||||| |||||| ||| |||||| ||||||||||| || ||||| | Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 19103 CAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAG 19162 |||| | | || | | | ||| | | | |||||| || | |||||| | || Sbjct 653439 CAACCACACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTTAG 653380 Query 19163 CCTTCTTTTTTACACATGGCA 19183 | |||||| |||||||||| Sbjct 653379 CTTTCTTTGCGACACATGGCA 653359 Score = 114 bits (126), Expect = 1e-20 Identities = 158/220 (72%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 18767 TTTTGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATC 18825 |||||| | |||||||||| || | |||||| || ||||||| ||||||| | ||| Sbjct 653887 TTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATA 653828 Query 18826 ATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCT 18885 | | || ||||| ||||| | || |||||| | || ||||| | |||||||||||| Sbjct 653827 AGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCA 653768 Query 18886 ATATTTACTGCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGA 18945 || || || || ||| ||||| ||| |||| ||| | || | || || Sbjct 653767 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATAATG 653708 Query 18946 TGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCT 18985 ||||| ||||| |||||||| ||||| ||||||| |||| Sbjct 653707 TGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Score = 113 bits (124), Expect = 5e-20 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 19450 TTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTC 19509 ||||| | || |||||||| |||||||||||||| ||||| |||||||||||||| ||| Sbjct 652949 TTAGAGAGGTCCACTTCTTCCACTGTCCAAAAAGATGCCTCAGCTTTTTTATACATATTC 652890 Query 19510 CATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAGAATA 19569 || || ||| | |||| |||||||| | |||||| ||| | ||||||||| || | Sbjct 652889 CAAATGTCAGGCCATTGAATAGGAAAAACAACAAACCTACGTGGATTTTCTTTTAGTAAT 652830 Query 19570 GGTTC 19574 ||||| Sbjct 652829 GGTTC 652825 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 |||||||||| |||||||| || | ||| | || ||||| || || ||||| || || Sbjct 654070 CATTACTCCCCACTTTTGATACTCTCCTACTTTCTTCTCAAAAAAGTTCGTTTTACCTTC 654011 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTT 18751 ||| || ||| |||||||||||||||||||||| Sbjct 654010 TAAAGAAATATGCTCCATAAAATCAAATGGATTTT 653976 >seq731 Length=568950 Score = 181 bits (200), Expect = 1e-40 Identities = 217/296 (73%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 47247 ttttctataattttgtttttta-at--tcatttgaccaaagttttcgttcagttaatgtt 47303 ||| ||||||||| || || | || ||||| |||||| |||| ||||||||| | Sbjct 414502 TTTGCTATAATTTCATTCTTCATATCCTCATT---CCAAAGATTTCTTTCAGTTAAATCT 414558 Query 47304 tttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATA 47363 || | ||||||||| || |||||||| ||||| || | ||||| | |||| ||| Sbjct 414559 CGCAACAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTTCTTGTATAAATA 414618 Query 47364 TTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTA 47423 ||||| ||||||||||||||||| ||||||||||| |||||||| ||||| |||||||| Sbjct 414619 TTACTGGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCAGTAGATGCTGTT 414678 Query 47424 GGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNN 47483 ||||| | ||||| || ||| ||||| | |||| ||| || | Sbjct 414679 GGCATAGGTGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATTTTTGCTTTTAAT 414738 Query 47484 NGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAAT 47539 |||||||||||| | ||||| |||| ||||||||| | |||||||| | ||| Sbjct 414739 GTTTTCCAATCCCATAAATCTGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 414794 Score = 165 bits (182), Expect = 9e-36 Identities = 221/305 (72%), Gaps = 2/305 (1%) Strand=Plus/Plus Query 48277 TATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTG 48336 |||| ||||||| || | ||| || | ||||| |||||||||||||||| |||||| | Sbjct 415902 TATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACATATATAG 415961 Query 48337 CCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAA 48396 | | | | ||||||| |||||| || |||||||| | ||||| || ||||| ||||| | Sbjct 415962 CAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATATA 416021 Query 48397 CTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCAC 48456 |||| | ||| || | | |||||| |||| |||| || || | || | || | Sbjct 416022 CTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTC 416081 Query 48457 TAGCTCTTATATTA-CTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | |||| ||| | || | || | || |||||||| ||| |||| || || ||| Sbjct 416082 TTGCTCGAATACAATGTACATTAAGT-CCAATACCACCAGCCGATTTACTAATAAGTGCA 416140 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 ||| ||| | |||| ||| |||||||| || ||||||||| ||| |||||| |||| Sbjct 416141 CACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAATAAAAAA 416200 Query 48576 CAACT 48580 ||||| Sbjct 416201 CAACT 416205 Score = 113 bits (124), Expect = 5e-20 Identities = 183/263 (70%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 48579 CTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAAC 48638 ||||||||||| | || ||| | || | ||| | ||||||||||||||| |||| Sbjct 416269 CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGCATGTGTAAAA 416328 Query 48639 CATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATC----CCATTGATG 48694 | |||||||| || ||||| ||||| ||||| ||||| || |||| |||| Sbjct 416329 TAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTCACCATGGATG 416388 Query 48695 TATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTAT 48754 || | || | ||||||||||| ||| ||||||||||||| ||| || ||| Sbjct 416389 GCAACT----GCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCCCATGTAT 416444 Query 48755 TTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTT 48814 ||| | | || |||| | ||||| |||||||||||||| || ||||| | Sbjct 416445 TTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGAAGTCTCT 416504 Query 48815 ATCATTAATAATTGATGAATTTA 48837 ||||| ||| |||| || |||| Sbjct 416505 ATCATAAATTATTGCAGAGTTTA 416527 Score = 98.7 bits (108), Expect = 1e-15 Identities = 111/146 (76%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| |||| ||||| |||||||||||||| || | | |||| |||||||||| Sbjct 416852 CACTAAAGCTTTTCTTTGTCTCTTTATGAAGATTCGAGACTGCAATTCGTGCAGCTAATA 416911 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 | |||||||||||||| | ||||| ||| || | |||| ||||| | ||||| Sbjct 416912 TTGCATAATCTGGATGTTTAGTTGT-CATAGTTGCTGCAGTTTCAGCTGCAAGATTATCT 416970 Query 49035 AATTCTTTAGTAGTTACACCTGTATA 49060 ||||| ||||||| || |||| ||| Sbjct 416971 AATTCAGTAGTAGTAACCCCTGAATA 416996 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||||||||| |||||||| || ||||| | |||| | ||||||| || Sbjct 414212 TCCATCCATAAAAATGCATTGATGTCAATTTTTCTGTTGTTGGTTTAGCTATATGAACAT 414271 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||||| ||||| ||||||||||| | ||| |||||||| | ||| || | Sbjct 414272 TTAATGATTGTGATTGATCTATAAATGCACCACGATCTGCTGCCATTTTTAAGATTATTT 414331 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAA 47199 |||||||||| ||||| ||||||||||||| Sbjct 414332 TTTGTGGTATTTCCCAAACTGTTTTATAAA 414361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560790577574040