Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq3181 107 1e-18 seq4862 102 6e-17 seq5459 89.7 4e-13 >seq3181 Length=1038259 Score = 107 bits (118), Expect = 1e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 48577 CTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATA 48636 ||||||||||||||||||| || || | || | || || || ||||| || ||||| | Sbjct 489040 CTTTTTGAATATTGTAATCTGACAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 488981 Query 48637 TCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAAC 48696 | || || |||||||| | |||| ||| || || || || || ||| ||| Sbjct 488980 TGAGACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTTT 488921 Query 48697 CCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAA 48756 | | || ||||| | || || || | || || ||||| |||||||||||||| |||| Sbjct 488920 CAATAGTATCTGATGATTCTACTTCAAGGGTGATGGTTTTACCCGTCAAAGTTTTCACAA 488861 Query 48757 AAATCTGCATCGTG 48770 | |||||||||||| Sbjct 488860 ATATCTGCATCGTG 488847 >seq4862 Length=216935 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| |||||||| || | ||| | || || | ||| |||||||||||| Sbjct 40489 TCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTACCGGCAAAT 40430 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || ||| ||||| | |||| || ||||| || ||| || ||| ||| Sbjct 40429 ATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGCTTTAACATTT 40370 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | |||||| || ||||| || | || || ||| Sbjct 40369 TCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTCTTGACA 40310 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 40309 AAAATTTGCAT 40299 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| || || || | || | ||| || || |||||||||||||| |||||||| Sbjct 39157 CCGCCTCTAAGTCGAAGAACAAGATGGAGAGTAGATTCTTTTTGAATATTATAATCAGAA 39098 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| ||||| || || || ||||| |||| || |||||||| | || Sbjct 39097 AGTGTGCGACCGTCTTCCAATTGTTTTCCAGCAAAGATCAATCTTTGTTGATCAGGAGGG 39038 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| || ||| ||| | | | || || || || || Sbjct 39037 ATCCCTTCCTTATCTTGAATTTTGGCTTTAACATTTTCAATCGTATCAGATGCTTCTACT 38978 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| |||||| || ||||| || | || || || ||||| ||||| Sbjct 38977 TCCAGCGTAATAGTCTTTCCAGTAAGTGTCTTGACGAAAATTTGCAT 38931 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || || | ||| | || || ||||| || || ||||| Sbjct 38893 TCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTTCCAGCAAAG 38834 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||||| | |||| || ||||| || ||| || ||| ||| Sbjct 38833 ATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCTTTAACATTT 38774 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | |||||| || ||||| || | || || ||| Sbjct 38773 TCAATCGTATCAGATGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTCTTGACA 38714 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 38713 AAAATTTGCAT 38703 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| ||||| || || | ||| | || || ||||| || || ||||| Sbjct 39805 TCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTTCCAGCAAAG 39746 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||||||| |||| || || || || ||| || ||| ||| Sbjct 39745 ATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTT 39686 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || || | |||||| || ||||| || | || || ||| Sbjct 39685 TCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTTTCCAGTAAGGGTCTTGACA 39626 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 39625 AAAATTTGCAT 39615 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || || || || | ||| | || || || || ||||| ||||| Sbjct 34562 TCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTCTAATTGTTTACCAGCAAAG 34503 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| || |||||||| | || | || ||||| || ||| || ||| || Sbjct 34502 ATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATTTTAGCTTTAACGTTT 34443 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | ||||| ||||| ||||| | || || ||||| || |||| |||||||| Sbjct 34442 TCAATTGTATCTGATGCCTCAACCTCGAGGGTTATTGTTTTGCCTGTCAGTGTTTTTACG 34383 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 34382 AAGATCTGCAT 34372 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 |||||||||||||| || ||||| || | ||| | || || || || || || ||||| Sbjct 40033 TCTTTTTGAATATTATAGTCAGAAAGCGTACGACCATCTTCTAATTGTTTTCCAGCAAAG 39974 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||||| |||||||||| |||| || || || || ||| || ||| ||| Sbjct 39973 ATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCTTTAACATTT 39914 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || || || || |||| |||||| || ||||| || | || || || Sbjct 39913 TCAATCGTATCAGAGGCTTCTACTTCCAGCGTAATAGTCTTTCCAGTAAGTGTCTTGACG 39854 Query 48756 AAAATCTGCAT 48766 ||||| ||||| Sbjct 39853 AAAATTTGCAT 39843 >seq5459 Length=1306269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || | ||| ||||||||||| || ||| || ||||| || ||||| || Sbjct 705875 CCCCCCCTGAGTCTCAATACCAAATGTAGTGTTGACTCCTTCTGAATGTTATAATCTGAA 705934 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || || ||||| || || ||||| |||| ||||| || || | || Sbjct 705935 AGAGTTCTTCCATCTTCTAACTGTTTGCCAGCAAAGATCAAGCGCTGCTGGTCTGGAGGG 705994 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| |||||| || ||| | | | || || || || ||| Sbjct 705995 ATTCCTTCTTTGTCTTGGATCTTTGCCTTCACATTCTCTATTGTATCAGAAGCTTCTACC 706054 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || ||||| || || | || |||||||| || ||||| Sbjct 706055 TCCAAGGTGATGGTTTTCCCTGTGAGGGTCTTTACAAAGATTTGCAT 706101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380066582725353