Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10194 107 6e-18 seq523 96.9 1e-14 seq34950 93.3 1e-13 seq5841 93.3 1e-13 seq967 89.7 2e-12 seq731 89.7 2e-12 >seq10194 Length=387616 Score = 107 bits (118), Expect = 6e-18 Identities = 125/166 (75%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 106924 CATACCATAGAAAAACTTGAACTTTTTACCATCTTCCTCAATTAACTTACCTGGATTTTC 106983 ||||||||| |||| ||||||||||| ||||| | ||||| | | |||| | ||| Sbjct 199785 CATACCATAAAAAAGTTTGAACTTTTTTCCATCCTTTTCAATAATATCACCTCCACATTC 199726 Query 106984 ATCGTGTCCCGCAAAGACACCGCCAACCATTACGAAATCAGCCCCGCCACCGAATGCTTT 107043 ||| ||||| ||||| | ||| || |||||||| ||||| || || |||| || ||||| Sbjct 199725 ATCATGTCCAGCAAACATACCACCTACCATTACAAAATCTGCTCCAGCACCAAAAGCTTT 199666 Query 107044 AGCCATATCACCAGGGCAAGTAATTCCACCATCACTAATAATATAA 107089 || | |||||| || ||||| || ||||| |||| |||| || Sbjct 199665 TGCTAAATCACCTGGACAAGTGCAACCGCCATC-CTAA-AATAAAA 199622 >seq523 Length=403916 Score = 96.9 bits (106), Expect = 1e-14 Identities = 133/181 (73%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 252505 GGGTAAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATA 252564 |||||| ||||||||| ||| ||||||| | | || | ||||||||| ||| | Sbjct 71100 GGGTAATATAGAACATGAGCTAAAGTATCCATTCGAACATGAAAATTTGTAATATATACT 71159 Query 252565 CCAAGCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCC 252624 || | || || || ||||||||||| || ||||||||||| ||| ||||||| || Sbjct 71160 CCCATAGCTTGTTTACCCATAGCACTTTGATAAGTATTTCTTGGACTTTGATTGTGATCA 71219 Query 252625 GGGAAAGGAATGCATGATGCTACA-ACACCGAAGAT-AGTGCTTGGGTGAATTTCACAGT 252682 || || ||||| ||| || ||| || || | || | ||| ||| ||||||||||||| Sbjct 71220 GGAAATGGAATAATTGAAGC-ACACACTCCTAGTATCATTGC-TGGATGAATTTCACAGT 71277 Query 252683 G 252683 | Sbjct 71278 G 71278 Score = 89.7 bits (98), Expect = 2e-12 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 251845 ATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCATCA 251904 ||||||||||| ||||||||||| ||||| || || ||||| ||| | || || ||| Sbjct 70186 ATAGTCATACGTGATGGAATAGCATGAGGATTAATTATAATGTCTGGTGTAAGACCTTCA 70245 Query 251905 GCAGTGAAGGGCATATCCTTTTCCTCAATAATG-TTTCCAATAGTTCCCTTTTGTCCGTG 251963 | || |||||||| | || | | ||| || ||||| ||| || || || ||||| Sbjct 70246 CATGAAAATGGCATATCTTCTTGC-CTATATTGAATTCCACAAGTACCTTTCTGACCGTG 70304 Query 251964 ACGAGAACTGAACTTATCACCAATAACAGGACGGCGAACACTACGAAGGCGAACCTTACA 252023 ||| ||| || ||||||||||| ||| |||||||| || | | | ||||| Sbjct 70305 ACGTGAAGCAAATTTATCACCAATTTGTGGAATACGAACACTGCGTACCCTTATTTTACA 70364 Query 252024 GAAGTTGTAACCATCACCGTT 252044 || || || || |||| ||| Sbjct 70365 AAATTTATATCCCTCACTGTT 70385 >seq34950 Length=207655 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 233271 TAGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCAT 233330 ||||||||| |||||| ||| || |||||||||||||| | || | |||||| || | Sbjct 186196 TAGCACCGTACCCAATCAAACAGTCTCGTTCCATTTCACCTAATCGTAAACCACCCTCTT 186137 Query 233331 TTGACCTACCCTGGACTGT---TTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGAT 233387 | | | ||| | |||| |||||| ||||| |||| ||| || || |||||||| Sbjct 186136 TGGCTCGACCTT---CTGTCGGTTGACGTGTTAATACAGCTCTCGGTCCTCGAGCACGAG 186080 Query 233388 AATTAATTTTATCTTTAACCATATGCTTCAGTCTCATATAATA 233430 || ||||| |||| |||||||| |||| | | |||||| Sbjct 186079 CATGCATTTTGTCTTGTACCATATGTTTCAATTTTTGATAATA 186037 >seq5841 Length=940276 Score = 93.3 bits (102), Expect = 1e-13 Identities = 182/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| ||||||||||| ||||| ||||||||| | |||||||| || ||| Sbjct 722607 TCCATAGCCTTTATTAAACGACGTTGAATGTAACCAGTTTCTGCAGTTTTTACGGCAGTA 722548 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 || || ||||| ||||||| |||||||| || || | | || || | || Sbjct 722547 TCGATAAGACCCTCACGACCTCCCATAGCGTGAAAATAAAATTCAGATGGAGTCAAACCA 722488 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAG 302754 ||| | | ||| |||| ||||| || | | || || || || ||| |||| Sbjct 722487 GCAAGATACGAGTTCTCGACGAATCCTCTGGATTCAGGACCATAATCATCCTTAATAAAA 722428 Query 302755 TGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGT 302814 ||||||| || || || | || | || ||||| || || || ||||| || ||| Sbjct 722427 TGTGGCAATGTTCTTTTACGGAAACCAAACGGAATACGTTTACCTTCTACGTTTTGTTGT 722368 Query 302815 CCCAGGCACGAAATCATCTGCGAAATATT 302843 || | ||| | ||| | ||| || ||||| Sbjct 722367 CCGACGCAAGCAATAACCTGAGAGATATT 722339 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 9/183 (5%) Strand=Plus/Minus Query 303616 GATTCTTCATC--TTGGGGCATATGTAAATTCATCTCATCACCGTCAAAATCAGCATTAT 303673 || ||| |||| ||| || | ||| |||||||| ||||| |||||||||||||| |||| Sbjct 721535 GAGTCTCCATCGATTGCGGTACATGCAAATTCATTTCATCTCCGTCAAAATCAGCGTTAT 721476 Query 303674 ACGGCTTTGTGTCCGCAACGTTCATCCGGAAAGTATCACCCTGCATCATAACAC--GGGC 303731 | || ||| || ||||| ||||| ||| || ||| ||| || | Sbjct 721475 ATGGTGATGTACAACTAAGATTCATACGGAATGTA-----CTCCATGGTAAAACTTTCAC 721421 Query 303732 TTTATGACACATCATAGACATTCTGTGTAGAGTTGGCTGACGATTGAAAAGCACGGGGTC 303791 | | |||| ||||||| ||| |||| |||||||| ||||||||||||| || | || Sbjct 721420 TCTGTGACCCATCATACTCATCTTGTGCAGAGTTGGTTGACGATTGAAAATTACCAGATC 721361 Query 303792 ACC 303794 ||| Sbjct 721360 ACC 721358 >seq967 Length=1612715 Score = 89.7 bits (98), Expect = 2e-12 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133450 AAAGAAATCTGACTGGGCTATTAAAT-GGATCCAGGACAAGCGTGCGAGTTTTGCTACTC 133508 ||||||| || ||||||| ||||||| |||| || | |||||| ||| || | Sbjct 653372 AAAGAAAGCTAACTGGGC-ATTAAATTGGATTACTCACGAAAGTGCGACCTTTCCTGAGC 653430 Query 133509 GTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCT-CTATT 133567 || | ||||| ||||||| ||||| || ||||| || ||||| ||| |||| |||| Sbjct 653431 GTGTGGTTGCATTTGCTGCGGTAGAAGGTATTTTCTTTAGTGGCA-GTTTTGCTGCTATA 653489 Query 133568 TTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCA 133627 || ||||| || || | ||| | | || ||||| ||| ||| ||||||||||| Sbjct 653490 TTCTGGCTAAAGAAAAGAGGTCTAATGCCAGGACTTACATTTAGTAATGAACTTATTTCT 653549 Query 133628 AGGGACGAGG 133637 || ||||||| Sbjct 653550 AGAGACGAGG 653559 >seq731 Length=568950 Score = 89.7 bits (98), Expect = 2e-12 Identities = 191/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 155994 AGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAA-CTACC 156052 || ||||| ||||| |||||| | ||| ||| || | ||| |||||||| || | Sbjct 415913 AGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACATATATAGCAAATGCTCCT 415972 Query 156053 ATTCCTCT--TGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATA 156110 || | | | ||||| ||||| ||||| || || || ||||| | || | | |||| Sbjct 415973 GGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTATTATATACTCTGATCATA 416032 Query 156111 GGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACA 156170 ||||| | |||||| || ||| || || || | | ||| || |||| | Sbjct 416033 GGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTACCTCTTGCTCGAATA 416092 Query 156171 TTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACA 156230 ||| | || |||||||||||||| | | ||||| ||| | || || | |||| Sbjct 416093 CAATGTACATTAAGTCCAATACCACCAGCCGATTTACTAATAAGTGCACACTTTTTTAAT 416152 Query 156231 GTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTA 156273 ||||| | || |||||||| |||||||||||||| || || Sbjct 416153 GTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAATA 416195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468279694986907