Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq5123 138 1e-27 seq1073 87.8 2e-12 >seq5123 Length=351926 Score = 138 bits (152), Expect = 1e-27 Identities = 161/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 172399 AAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAATGATATAGGTG 172458 ||||| | |||||| |||||| || ||||| || ||||| | |||| ||| | |||| Sbjct 332199 AAGAATTGTTATGGTTTATTAGGGGATCAACAAATGCAAAAGAGTTAAGTGAAAAAGGTA 332258 Query 172459 TTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGGTTTACTGAAA 172518 || | ||||| |||| || | || |||| |||||||||| | || ||||| || | Sbjct 332259 TTCACATTTGGGATGAAAACAGCTCACGTGTGTTTTTAGATTCTTCTGGTTTTACAGATA 332318 Query 172519 GAAAAGAAGGTGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAAT 172578 | ||||||| |||||||| || ||||||||||||||||||||||| || || ||| Sbjct 332319 GGGAAGAAGGAGATTTAGGGCCTGTTTATGGATTTCAATGGAGACATTTTGGTGCAAAAT 332378 Query 172579 ATATCGACTGTG-ATACAGATTACACAGGACAAGG 172612 |||| || | || || ||||||| | || ||||| Sbjct 332379 ATATAGA-TATGCATGCAGATTATAATGGGCAAGG 332412 >seq1073 Length=1777474 Score = 87.8 bits (96), Expect = 2e-12 Identities = 124/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 165953 AAGGTTGCTCAATTAAGTGGGTATGTTGCAGAACAAACAGATTATAAGCATGGTGAACAA 166012 || ||||| || ||| ||| | ||| || ||||| ||| ||| | ||||||||| Sbjct 443447 AAAGTTGCACAGTTAGCTGGTTCTGTAGCCGAACATTCAGCATATCATCATGGTGAAGTT 443506 Query 166013 AAT-TTATGTGAAACTATAATTAAGTTTGCCCAAGATTTTGTTGGTACAAATAATATAGC 166071 | |||||| || | || ||||| |||| ||| |||| || || | ||||| ||| Sbjct 443507 TCTCTTATGTCAA-CAATTATTAATCTTGCACAAAATTTCGTAGGAAGCAATAACATAAA 443565 Query 166072 ATTACTTGAACCTGATGGTCAATTTGGTACCAGATTAGAAGGAGGTAAAGAT 166123 |||||| |||| ||||||||||||||| ||| | |||||| |||||| Sbjct 443566 TTTACTTCAACCAATTGGTCAATTTGGTACAAGACTTACAGGAGGAAAAGAT 443617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631006324920680