Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq635 127 4e-24 seq2060 123 4e-23 seq4862 107 3e-18 >seq635 Length=2663540 Score = 127 bits (140), Expect = 4e-24 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027 ||||| ||||| |||||| | || || || ||||| | ||||| ||||| | ||||| Sbjct 1896420 AGAAAATATATATATTCTTTAAATCACCTGGAAAATTCTGAAACTCATGATGATTTATGG 1896361 Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087 ||||||| |||| || ||| ||| | ||||||||||||| | | ||||||||||| Sbjct 1896360 AATGCATGTCAAAATCAAATGGTGATAATAGGAAAAATGCATGGATACTTACGAATGTAT 1896301 Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT-GCTTT-GAGTTATAGTA 183145 ||||| ||||| || | |||||||| ||| || | |||| ||||| || | | Sbjct 1896300 TGGGCAAAAAAATTATTAGAATGGACTGAAACACCTG-AGATAGCTTTAGAATGGGCAAA 1896242 Query 183146 TCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201 | ||| | || |||||||| |||||||| |||||||| || ||||||||| Sbjct 1896241 T-TATTTAAATAATAAGTATAGTATAGACGGTTGTGATCCTAATGGTTACGTAGGT 1896187 Score = 86.0 bits (94), Expect = 1e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256 |||| || ||||||||||| || || | || ||| | |||| ||||||| ||||| Sbjct 1896117 TAGGCTGCATGTGGTCTATCTGTGGTGTTCATGATCATGGTTGGACAGAAAGAAATATAT 1896058 Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGC 183311 ||||||| ||||||||||||||||| || | | ||| |||||| ||||||| Sbjct 1896057 TTGGAAAAATAAGATATATGAATTACGAAGGATGTAAACGAAAATTTAATGTTGC 1896003 >seq2060 Length=769788 Score = 123 bits (136), Expect = 4e-23 Identities = 182/255 (71%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 142968 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTT 143027 |||| || || ||| || ||||| || | | | ||||| || || ||||| || || Sbjct 618314 GATACAGTAGAATGGGCTGCTTGGCAAGATAGAGGTGATCCAGTGTTACATATTGAT-TT 618372 Query 143028 AG-GAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAAT 143086 || || |||||| ||| | ||| | || || || ||| || ||||| | | |||||| Sbjct 618373 AGTGAAATGGGCAGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGAAAAAT 618432 Query 143087 AGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAA 143146 ||||| |||||||||||||||| || |||| | | | | | | |||||||| || Sbjct 618433 AGCCAGCGGTATATGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGACCCTTTGAA 618492 Query 143147 ACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAA 143206 || || ||||||||||| || ||||||| ||||||||||||||| |||| | | Sbjct 618493 GCCCCTAATTTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCACC 618552 Query 143207 ACATATAGATGCTTT 143221 ||| || ||| ||| Sbjct 618553 ACAGGTATATGTTTT 618567 >seq4862 Length=216935 Score = 107 bits (118), Expect = 3e-18 Identities = 106/139 (76%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 |||||| |||| || || |||||||||||||| || || | || |||||| || Sbjct 39130 AGAGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTGCGACCGTCTTCCAATTGTTTT 39071 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | |||||||||| | ||| | || |||||||||||||||| || ||| Sbjct 39070 CCAGCAAAGATCAATCTTTGTTGATCAGGAGGGATCCCTTCCTTATCTTGAATTTTGGCT 39011 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 39010 TTAACATTTTCAATCGTAT 38992 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/139 (75%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 || ||| |||| || || ||||||||||| || || || | || ||||||||| Sbjct 38902 AGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTT 38843 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||||| |||||||||||| | || | || |||||||||||||||| || ||| Sbjct 38842 CCAGCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 38783 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 38782 TTAACATTTTCAATCGTAT 38764 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 || ||| |||| || || ||||||||||| || || || | || ||||||||| Sbjct 39814 AGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTT 39755 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 |||||| |||||||||||| | || | || |||| ||||||||||| || ||| Sbjct 39754 CCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCT 39695 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 39694 TTAACATTTTCAATCGTAT 39676 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||| ||||| || || | || |||||||| Sbjct 40042 AGGGTAGATTCTTTTTGAATATTATAGTCAGAAAGCGTACGACCATCTTCTAATTGTTTT 39983 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| |||||||||||| | || | || |||| ||||||||||| || ||| Sbjct 39982 CCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCT 39923 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 39922 TTAACATTTTCAATCGTAT 39904 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 || ||| |||| || || |||||||| || || || || | ||| |||||||| Sbjct 40270 AGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACAATCTTCTAATTGTTTA 40211 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | |||||| ||| | || | || |||||||||||||||| || ||| Sbjct 40210 CCAGCAAAGATCAATCTTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 40151 Query 81753 TTTATATTTTCAATCGTAT 81771 || | ||||||||| |||| Sbjct 40150 TTAACATTTTCAATTGTAT 40132 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Minus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697 || ||| |||| || || |||||||||||||| || || | || ||||||| | Sbjct 40498 AGGGTAGATTCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTA 40439 Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||| || | ||| || ||| |||| | || |||||||||||||||| || ||| Sbjct 40438 CCGGCAAATATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 40379 Query 81753 TTTATATTTTCAATCGTAT 81771 || | |||||||||||||| Sbjct 40378 TTAACATTTTCAATCGTAT 40360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901292576516960