Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq635 127 4e-24
seq2060 123 4e-23
seq4862 107 3e-18
>seq635
Length=2663540
Score = 127 bits (140), Expect = 4e-24
Identities = 173/236 (73%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027
||||| ||||| |||||| | || || || ||||| | ||||| ||||| | |||||
Sbjct 1896420 AGAAAATATATATATTCTTTAAATCACCTGGAAAATTCTGAAACTCATGATGATTTATGG 1896361
Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087
||||||| |||| || ||| ||| | ||||||||||||| | | |||||||||||
Sbjct 1896360 AATGCATGTCAAAATCAAATGGTGATAATAGGAAAAATGCATGGATACTTACGAATGTAT 1896301
Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGAT-GCTTT-GAGTTATAGTA 183145
||||| ||||| || | |||||||| ||| || | |||| ||||| || | |
Sbjct 1896300 TGGGCAAAAAAATTATTAGAATGGACTGAAACACCTG-AGATAGCTTTAGAATGGGCAAA 1896242
Query 183146 TCTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGT 183201
| ||| | || |||||||| |||||||| |||||||| || |||||||||
Sbjct 1896241 T-TATTTAAATAATAAGTATAGTATAGACGGTTGTGATCCTAATGGTTACGTAGGT 1896187
Score = 86.0 bits (94), Expect = 1e-11
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 183197 TAGGTTGTATGTGGTCTATTTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATAT 183256
|||| || ||||||||||| || || | || ||| | |||| ||||||| |||||
Sbjct 1896117 TAGGCTGCATGTGGTCTATCTGTGGTGTTCATGATCATGGTTGGACAGAAAGAAATATAT 1896058
Query 183257 TTGGAAAGATAAGATATATGAATTATGAGAGTTCTAAGAAGAAATTTGATGTTGC 183311
||||||| ||||||||||||||||| || | | ||| |||||| |||||||
Sbjct 1896057 TTGGAAAAATAAGATATATGAATTACGAAGGATGTAAACGAAAATTTAATGTTGC 1896003
>seq2060
Length=769788
Score = 123 bits (136), Expect = 4e-23
Identities = 182/255 (71%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 142968 GATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCATATAGAACTT 143027
|||| || || ||| || ||||| || | | | ||||| || || ||||| || ||
Sbjct 618314 GATACAGTAGAATGGGCTGCTTGGCAAGATAGAGGTGATCCAGTGTTACATATTGAT-TT 618372
Query 143028 AG-GAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAGCAAAAAT 143086
|| || |||||| ||| | ||| | || || || ||| || ||||| | | ||||||
Sbjct 618373 AGTGAAATGGGCAGATTTATTTTTAATTGCTCCATTAGATGCTAATACTCTTGGAAAAAT 618432
Query 143087 AGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAA 143146
||||| |||||||||||||||| || |||| | | | | | | |||||||| ||
Sbjct 618433 AGCCAGCGGTATATGCGATAATATATTAACTTGTGTTGCACGTGCCTGGGACCCTTTGAA 618492
Query 143147 ACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTACAGAAAA 143206
|| || ||||||||||| || ||||||| ||||||||||||||| |||| | |
Sbjct 618493 GCCCCTAATTTTTTGTCCTGCCATGAATACAAAAATGTGGGAACATCCTGTTACTGCACC 618552
Query 143207 ACATATAGATGCTTT 143221
||| || ||| |||
Sbjct 618553 ACAGGTATATGTTTT 618567
>seq4862
Length=216935
Score = 107 bits (118), Expect = 3e-18
Identities = 106/139 (76%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
|||||| |||| || || |||||||||||||| || || | || |||||| ||
Sbjct 39130 AGAGTAGATTCTTTTTGAATATTATAATCAGAAAGTGTGCGACCGTCTTCCAATTGTTTT 39071
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||| | |||||||||| | ||| | || |||||||||||||||| || |||
Sbjct 39070 CCAGCAAAGATCAATCTTTGTTGATCAGGAGGGATCCCTTCCTTATCTTGAATTTTGGCT 39011
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||||||||
Sbjct 39010 TTAACATTTTCAATCGTAT 38992
Score = 98.7 bits (108), Expect = 2e-15
Identities = 104/139 (75%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697
|| ||| |||| || || ||||||||||| || || || | || |||||||||
Sbjct 38902 AGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTT 38843
Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
|||||| |||||||||||| | || | || |||||||||||||||| || |||
Sbjct 38842 CCAGCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 38783
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||||||||
Sbjct 38782 TTAACATTTTCAATCGTAT 38764
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/139 (74%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697
|| ||| |||| || || ||||||||||| || || || | || |||||||||
Sbjct 39814 AGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTCTAACTGTTTT 39755
Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
|||||| |||||||||||| | || | || |||| ||||||||||| || |||
Sbjct 39754 CCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCT 39695
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||||||||
Sbjct 39694 TTAACATTTTCAATCGTAT 39676
Score = 95.1 bits (104), Expect = 2e-14
Identities = 103/139 (74%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
|| ||| |||| || || |||||||| ||||| || || | || ||||||||
Sbjct 40042 AGGGTAGATTCTTTTTGAATATTATAGTCAGAAAGCGTACGACCATCTTCTAATTGTTTT 39983
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||| |||||||||||| | || | || |||| ||||||||||| || |||
Sbjct 39982 CCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTGAATTTTGGCT 39923
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||||||||
Sbjct 39922 TTAACATTTTCAATCGTAT 39904
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/139 (73%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696
|| ||| |||| || || |||||||| || || || || | ||| ||||||||
Sbjct 40270 AGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACAATCTTCTAATTGTTTA 40211
Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||||||| | |||||| ||| | || | || |||||||||||||||| || |||
Sbjct 40210 CCAGCAAAGATCAATCTTTGCTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 40151
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||| ||||
Sbjct 40150 TTAACATTTTCAATTGTAT 40132
Score = 86.0 bits (94), Expect = 1e-11
Identities = 101/139 (73%), Gaps = 11/139 (8%)
Strand=Plus/Minus
Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC------ 81697
|| ||| |||| || || |||||||||||||| || || | || ||||||| |
Sbjct 40498 AGGGTAGATTCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTCTAGCTGTTTA 40439
Query 81698 -----AAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752
||| || | ||| || ||| |||| | || |||||||||||||||| || |||
Sbjct 40438 CCGGCAAATATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTGAATTTTGGCT 40379
Query 81753 TTTATATTTTCAATCGTAT 81771
|| | ||||||||||||||
Sbjct 40378 TTAACATTTTCAATCGTAT 40360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 901292576516960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |