Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2432 154 3e-32 seq731 113 1e-19 seq5841 109 1e-18 seq1073 104 6e-17 >seq2432 Length=460960 Score = 154 bits (170), Expect = 3e-32 Identities = 152/194 (78%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 305293 TGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATC 305352 |||||||||| || ||||||| || ||||| || | ||||||||||||||||| Sbjct 26695 TGATATTGTTGAAAGGCATTTGAGAGATGATGATGTAGTATTATTCAATAGGCAACCATC 26754 Query 305353 ACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG-ACATTTC 305411 | |||||| | ||| ||||| ||||||| ||||||||| | || | |||||| Sbjct 26755 TTTACATAAATTAAGTATCATGGCACATAAAGCAAAAGTATTAGAT-CATAGAACATTTA 26813 Query 305412 GATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATA 305471 |||| |||| | ||| |||||| ||||||||||| ||||||||||| |||||||||||| Sbjct 26814 GATTTAATGAATGTGTTTGTACTCCTTATAATGCTGATTTTGATGGTGATGAAATGAATT 26873 Query 305472 TGCATGTACCTCAA 305485 | ||| |||||||| Sbjct 26874 TACATTTACCTCAA 26887 >seq731 Length=568950 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||||||| |||| |||| | ||| || |||| | ||||||||||| |||||| Sbjct 415543 CAAATTCAAGCTAGAGAATTATGGACAGCTATTCTTGTTGCCCAAGTTGAAACAGGAACT 415484 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||||||| | |||||||||||| ||||| ||||| ||||| | ||||| |||||| Sbjct 415483 CCTTATATGCTTTATAAAGATCATTGCAATCGTAAATCAAATCATAAAAATTTGGGAACA 415424 Query 111135 ATTAAGTCTAGTAATTTGTG 111154 || |||| |||||||||||| Sbjct 415423 ATCAAGTGTAGTAATTTGTG 415404 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 112986 AAACATGGAACTACAAACTCTCTACTGTTGGCACCAATGCCTACAGCTTCGACTGCACAG 113045 |||||||| | | ||| ||| |||| | ||||| ||||| ||||| || |||||||| Sbjct 414719 AAACATGGTATTCGAAATTCTTTACTAATTGCACCTATGCCAACAGCATCTACTGCACAA 414660 Query 113046 ATTCTCGGTAATAATGAATGTTTCGAGCCAATTACAAGTAATATTTATGTCCGACGTGTT 113105 ||| | || |||||||| | | | || ||| ||| |||||||||||| || | ||| Sbjct 414659 ATTTTGGGAAATAATGAGTCTATAGAACCATATACCAGTAATATTTATACAAGAAGAGTT 414600 Query 113106 CTAGCAGGTGAGTTT 113120 | |||| |||||| Sbjct 414599 TTGTCAGGAGAGTTT 414585 >seq5841 Length=940276 Score = 109 bits (120), Expect = 1e-18 Identities = 128/169 (76%), Gaps = 8/169 (5%) Strand=Plus/Plus Query 305323 TGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAA 305382 |||| ||| | |||||| | |||||| | ||||| || ||| |||||||| ||| | Sbjct 721360 TGATCTGGTAATTTTCAATCGTCAACCAACTCTGCACAAGATGAGTATGATGGGTCACAG 721419 Query 305383 AGTCAAAGTATTATC-TGGATTGACATTTCGATTAAATGTAAGTGCTTGTACG---CCTT 305438 ||| ||||| ||| | |||| | ||||| || | ||| | ||| ||||| || | Sbjct 721420 AGTGAAAGTTTTACCATGGAGT-ACATTCCGTATGAATCTTAGT---TGTACATCACCAT 721475 Query 305439 ATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATC 305487 |||| || |||||||| ||||||||||||||| |||||||||| ||||| Sbjct 721476 ATAACGCTGATTTTGACGGAGATGAAATGAATTTGCATGTACCGCAATC 721524 >seq1073 Length=1777474 Score = 104 bits (114), Expect = 6e-17 Identities = 212/304 (70%), Gaps = 16/304 (5%) Strand=Plus/Plus Query 279839 AATTATGATGTTCATCGTTCTATTCCTCATTTAATGGATGGTTTGAAACCT--TCACAGC 279896 |||||||| | ||| ||||||||| || | ||||||||||| |||||| ||| || Sbjct 443342 AATTATGACAATGTTCGATCTATTCCTAATATGATGGATGGTTTTAAACCTGGTCAAAG- 443400 Query 279897 GTAAG-ATTATATTCAGTTGTTTCAAAAGAAAATTGGTAAA--GGAAATTCGTGTTGCTC 279953 | ||| ||| ||| || || || ||| | || || ||| ||| | ||||| | Sbjct 443401 GAAAGTATTGTATACA--TGCTTGAAACGTAA--TGACAAACGTGAAGTAAAAGTTGCAC 443456 Query 279954 AGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAG 280013 ||||||| |||| ||| | |||||| ||| |||||||| ||||||| |||||| | Sbjct 443457 AGTTAGCTGGTTCTGTAGCCGAACATTCAGCATATCATCATGGTGAAGTTTCTCTT--AT 443514 Query 280014 GT--GCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTC 280071 || | ||| | |||||| ||| |||| | | || ||| ||||| | ||| Sbjct 443515 GTCAACAATTATTAATCTTGCACAAAATTTCGTAGGAAGCAATAACATAAATTTACTTCA 443574 Query 280072 ACCAAATGGTCAATTTGGTTCTCGTATTCACA-ATGGAAAAGATCATGGTAGTGCTCGTT 280130 ||||| ||||||||||||| | | | | ||| ||||||||| | ||| |||| | Sbjct 443575 ACCAATTGGTCAATTTGGTACAAG-ACTTACAGGAGGAAAAGATGCAGCGAGTCCTCGAT 443633 Query 280131 ACAT 280134 |||| Sbjct 443634 ACAT 443637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183959979817171