Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5459 140 8e-28 seq4862 93.3 1e-13 >seq5459 Length=1306269 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || |||||||| || || || |||||||| ||| ||||||| Sbjct 705870 CAAATCTTTGTCAAAACACTGACAGGAAAGACCATTACCTTGGAAGTAGAAGCTTCTGAC 705811 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||| ||||| || ||||||||| || || ||| Sbjct 705810 ACAATAGAGAATGTGAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCTGATCAGCAA 705751 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || ||| ||||||||||||| ||||| | ||||| ||| || Sbjct 705750 CGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGAAGAACTTTATCAGATTATAACATC 705691 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| ||||||||| | || | ||||| Sbjct 705690 CAGAAGGAGTCAACTCTTCACTTGGTACTAAGACT 705656 Score = 131 bits (144), Expect = 4e-25 Identities = 155/209 (74%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || || ||||||||||| ||||||||||| || ||| |||||||||| | Sbjct 706776 TTTGTAAAGACACTTACAGGAAAAACCATCACTTTGGAGGTAGAAGCTTCTGACACAATA 706717 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| |||||| ||||| || ||||||||| || || ||| | | Sbjct 706716 GAGAATGTGAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCTGATCAGCAACGTTTG 706657 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| || || || ||| ||||||||||||| || | | ||||| ||| ||||||| Sbjct 706656 ATCTTTGCTGGGAAACAGCTGGAAGATGGAAGAACCCTTTCAGATTATAACATCCAGAAG 706597 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| ||| | || | ||||| Sbjct 706596 GAGTCAACTCTCCACTTGGTACTAAGACT 706568 Score = 131 bits (144), Expect = 4e-25 Identities = 160/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||||||||| |||||||| || || ||| ||||||| Sbjct 721534 CAGATCTTTGTTAAGACATTAACAGGAAAAACCATCACTTTAGAGGTTGAAGCTTCTGAC 721475 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| ||||| || ||| || ||||| ||||||||||| || || || Sbjct 721474 ACAATAGAAAATGTAAAAGCTAAA-ATCCAAGACAAAGAAGGAATCCCACCTGATCAGCA 721416 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | | |||||||| || || ||||| ||||||||||| || | | ||||| ||| | Sbjct 721415 ACGTTTGATCTTCGCTGGCAAACAGTTAGAAGATGGAAGAACCCTTTCAGATTATAACAT 721356 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||| || ||||| ||||| ||| | || |||||||| Sbjct 721355 CCAAAAGGAGTCAACTCTCCACTTGGTATTGAGACT 721320 Score = 125 bits (138), Expect = 2e-23 Identities = 141/189 (75%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||||||||| ||||| ||||| || ||| |||||||||| | || Sbjct 706998 AAGACCCTCACAGGAAAAACCATCACCTTGGAGGTAGAAGCTTCTGACACAATAGAGAAT 706939 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||||||| || || ||| | | ||||| Sbjct 706938 GTGAAGGCAAAGATCCAAGATAAGGAAGGAATTCCCCCTGATCAGCAACGTTTGATCTTT 706879 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| ||||||||||||| || | | ||||| ||| ||||||| ||||| Sbjct 706878 GCTGGGAAACAGCTGGAAGATGGAAGAACCCTTTCAGATTATAACATCCAGAAGGAGTCA 706819 Query 206365 ACTCTTCAC 206373 ||||| ||| Sbjct 706818 ACTCTCCAC 706810 Score = 123 bits (136), Expect = 6e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || ||||||||||| || || |||||||| ||| |||||| Sbjct 706326 CAAATCTTTGTCAAGACACTGACAGGAAAAACCATTACCTTGGAAGTAGAAGCTTCTGAT 706267 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||| || ||||| || ||||||||| || || ||| Sbjct 706266 ACAATAGAGAATGTGAAGGCAAAAATCCAAGATAAGGAAGGAATTCCCCCTGATCAGCAA 706207 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | ||||| || || || ||| |||||||||| || |||||| | ||||| ||| || Sbjct 706206 CGTTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGAGAACTTTGTCAGATTATAACATC 706147 Query 206353 CAGAAAGAGTCTACTCTTCAC 206373 ||||| ||||| ||||| ||| Sbjct 706146 CAGAAGGAGTCAACTCTCCAC 706126 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || |||||||| ||||| ||||| ||||| || ||| |||||| ||| | || Sbjct 710771 AAGACCCTCACAGGGAAAACTATCACCTTGGAGGTAGAAGCTTCTGATACAATAGAGAAT 710712 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| |||||||||||| | || || ||| || | ||||| Sbjct 710711 GTGAAGGCAAAGATCCAAGATAAAGAAGGAATTCTCCCTGATCAGCAACGATTGATCTTT 710652 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| | ||||||||||| || | | ||||| ||| | ||||| ||||| Sbjct 710651 GCTGGGAAACAGCTAGAAGATGGAAGAACCCTTTCAGATTATAACATTCAGAAGGAGTCA 710592 Query 206365 ACTCTTCACCTTGTTTTGAGACT 206387 || || || | || |||||||| Sbjct 710591 ACACTCCATTTGGTATTGAGACT 710569 Score = 122 bits (134), Expect = 2e-22 Identities = 153/209 (73%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 206180 TTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTC 206238 |||| ||| || |||||||| ||||| ||||| ||||| || ||| |||||| ||| | Sbjct 706092 TTTGTAAAGACCCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCTTCTGATACAATA 706033 Query 206239 GAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT 206298 || || ||| |||||| ||||| ||||||||||| || ||| || | | Sbjct 706032 GAGAATGTGAAGGCAAAGATCCAAGACAAAGAAGGAATCCCTCCAGACCAGCAGCGCTTG 705973 Query 206299 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 206358 ||||| || || || ||||| ||||||||||| ||| | | ||||| ||| | ||||| Sbjct 705972 ATCTTTGCTGGCAAACAGTTAGAAGATGGAAGAACTCTTTCAGATTATAACATTCAGAAG 705913 Query 206359 GAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| || || || | || |||||||| Sbjct 705912 GAGTCAACACTACATTTGGTATTGAGACT 705884 Score = 116 bits (128), Expect = 9e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || |||||||||||||| || || ||||| || ||| |||||| Sbjct 706554 CAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTCTGAT 706495 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | ||| ||||| || ||| || ||||| |||||||||||| || ||| || Sbjct 706494 ACAATAGAAAATGTAAAAGCGAAA-ATCCAAGACAAAGAAGGAATTCCTCCAGACCAGCA 706436 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || || || |||||||| || || | | ||||| ||| | Sbjct 706435 GCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAACAT 706376 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 |||||| ||||| || || || | || |||||||| Sbjct 706375 CCAGAAGGAGTCAACACTACATTTGGTATTGAGACT 706340 Score = 116 bits (128), Expect = 9e-21 Identities = 154/209 (74%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| ||||| ||||| |||||||| ||| |||||||||| | || Sbjct 721294 AAAACACTGACAGGGAAAACCATCACCTTGGAAGTAGAAGCTTCTGACACAATAGAGAAT 721235 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || |||||||| || || || | | ||||| Sbjct 721234 GTGAAAGCTAA-GATACAAGATAAGGAAGGAATCCCTCCTGATCAGCAGCGTTTGATCTT 721176 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAG--GACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 || || || ||| | ||||||||||| ||||| | |||||||| ||||||| || Sbjct 721175 TGCTGGCAAACAGCTAGAAGATGGAAGAACACTTTTG--GATTACAATATCCAGAAGGAA 721118 Query 206362 TCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| ||||| || || |||||||| Sbjct 721117 TCCACTCTCCACCTGGTGTTAAGACTTCG 721089 Score = 109 bits (120), Expect = 1e-18 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| ||||| |||||||| ||| ||||||| || | || Sbjct 705630 AAGACACTGACAGGAAAAACCATCACCTTGGAAGTAGAAGCTTCTGACTCAATAGAGAAT 705571 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| ||||| ||||| || ||||||||| || || ||| | | ||||| Sbjct 705570 GTGAAAGC-TAAGATACAAGATAAGGAAGGAATTCCCCCTGATCAGCAACGTTTGATCTT 705512 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || || ||| | |||||||| |||||| | | ||||| ||| | ||||| || || Sbjct 705511 TGCTGGCAAACAGCTAGAAGATGGGAGGACTCTTTCAGATTATAACATTCAGAAGGAATC 705452 Query 206364 TACTCTTCACCTTGTTTTGAGACT 206387 ||||| || | || || ||||| Sbjct 705451 AACTCTCCATTTGGTATTAAGACT 705428 Score = 98.7 bits (108), Expect = 2e-15 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| |||||| || |||||||||| ||||| ||||| || ||| |||||| Sbjct 709871 CAAATCTTTGTCAAAACACTGTCAGGAAAAACCATCACCTTGGAGGTAGAAGCTTCTGAT 709812 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || ||||| || ||| || ||||| ||||| ||||| | ||| || Sbjct 709811 ACAATAGAGAATGTAAAAGCTAAA-ATCCAAGACAAAGATGGAATCTCTGTAGACCAGCA 709753 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || || ||||||||||| || ||| | | ||||| ||| | Sbjct 709752 GCGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTTCGGATTATAACAT 709693 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||| ||||| || | || | || |||||||| Sbjct 709692 TCAGAAGGAGTCAACAATACATTTGGTATTGAGACT 709657 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 204755 AGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTT 204814 ||||| | || | ||||||||| ||||| ||||||| ||||| || | ||||| ||| Sbjct 705656 AGTCTTAGTACCAAGTGAAGAGTTGACTCCTTCTGGATGTTATAATCTGATAAAGTTCTT 705715 Query 204815 CCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 |||||||||||||| || || || ||||| | ||||| ||| Sbjct 705716 CCATCTTCCAGCTGTTTCCCAGCAAAGATCAAACGTTGCTGA 705757 Score = 86.0 bits (94), Expect = 1e-11 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 || || ||| ||| || || ||||||| || ||||| || || || ||| |||||| Sbjct 710555 CAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTAGAGGTAGAAGCTTCTGAT 710496 Query 206233 ACAGTCGAATCAGTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| | || ||||| || ||| || ||||| ||||| ||||| | | ||| || Sbjct 710495 ACAATAGAGAATGTAAAAGCTAAA-ATCCAAGACAAAGATGGAATCTCTGCAGACCAGCA 710437 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | | ||||| || || || || || |||||||| || || | | ||||| ||| | Sbjct 710436 GCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAACAT 710377 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACT 206387 ||||||||||| || | || | || |||||||| Sbjct 710376 TCAGAAAGAGTCAACAATACATTTAGTATTGAGACT 710341 >seq4862 Length=216935 Score = 93.3 bits (102), Expect = 1e-13 Identities = 144/202 (71%), Gaps = 3/202 (1%) Strand=Plus/Plus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || ||||| || ||||| || || ||||||| ||| || |||||| | Sbjct 40991 TTTTGTCAAGACTCTCACTGGGAAAACTATAACCCTGGAAGTTGAAGCATCGGACACAAT 41050 Query 206238 CGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGAC 206296 || || ||||| ||| |||| || || ||||| || || || ||||||| Sbjct 41051 TGAGAATGTTAAAGCTAAA-ATTCGTGATAAGGAAGGTATCCCACCTGATCAACAAAGAC 41109 Query 206297 TTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGA 206356 | ||||| || ||||| || ||||||||||| | || | | ||||| || | |||| Sbjct 41110 TGATCTTTGCTGGAAAACAATTGGAAGATGGCCGTACGCTTTCTGATTATAATATTCAGA 41169 Query 206357 AAGAGTCTACTCTTCACCTTGT 206378 |||| || ||||| || ||||| Sbjct 41170 AAGAATCAACTCTGCATCTTGT 41191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178979979416731