Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_026430.1
Length=125767
Score E
Sequences producing significant alignments: (Bits) Value
seq4862 100 2e-16
seq5459 89.7 4e-13
seq3181 86.0 5e-12
seq1782 84.2 2e-11
>seq4862
Length=216935
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || || ||| | ||||| ||||| ||||| ||||| |||| ||
Sbjct 39843 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCCTCT 39902
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| |||||| || |||||||| | || ||||||
Sbjct 39903 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39962
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| || || | ||| || ||||||||||||||| | || | || || ||
Sbjct 39963 CAAAGACTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACGCTTTCTGACTATAAT 40022
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469
|| |||||||||||||| || ||| | |||
Sbjct 40023 ATTCAAAAAGAATCTACCCTCCATCTTGTA 40052
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||||||||| || || | ||||| ||||| ||||| | ||| |||| ||
Sbjct 40070 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTAGAAGTAGAAGCCTC 40129
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | ||| | || ||| |||||| || || ||||| | || ||||||
Sbjct 40130 TGATACAATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 40189
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
||||| | || | ||| || |||||||||||||||| | || | ||| || ||
Sbjct 40190 GCAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATTGTCGTACGCTTTCCGACTATAA 40249
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTA 106469
|| |||||||||||||| || ||| | |||
Sbjct 40250 TATTCAAAAAGAATCTACCCTCCATCTTGTA 40280
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||||||||| || || | ||||| ||||| ||||| | ||| |||| ||
Sbjct 39615 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 39674
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| |||||| || |||||||| | || ||||||
Sbjct 39675 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39734
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| || || | ||| || ||||| ||||||||| | || | ||||| ||
Sbjct 39735 CAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTTCAGATTATAAT 39794
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469
|| |||||||||||||| || ||| | |||
Sbjct 39795 ATTCAAAAAGAATCTACCCTCCATCTTGTA 39824
Score = 93.3 bits (102), Expect = 3e-14
Identities = 147/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||||||||| || || | ||||| ||||| ||||| | ||| |||| |
Sbjct 38702 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCATC 38761
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | ||| | || ||| |||||| || || ||||| | || ||||||
Sbjct 38762 TGATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 38821
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|||||| || || | ||| || ||||| ||||||||| | || | ||||| ||
Sbjct 38822 ACAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTTCAGATTATAA 38881
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTA 106469
|| |||||||||||||| || ||| | |||
Sbjct 38882 TATTCAAAAAGAATCTACCCTCCATCTTGTA 38912
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||||||||| || || ||| | ||||| ||||| ||||| ||||| |||| |
Sbjct 38931 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCATCT 38990
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| | ||| | || ||| |||||| || || ||||| | || |||||||
Sbjct 38991 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGGATCCCTCCTGATCAA 39050
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA--TTCTAAAACTATGGGCGATTACA 106437
||||| | || | ||| || |||||||| ||||| || | ||| | ||||| |
Sbjct 39051 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGTCGCACACTTT--CTGATTATA 39108
Query 106438 ACATACAAAAAGAATCTACACTACAT 106463
| || |||||||||||||| || |||
Sbjct 39109 ATATTCAAAAAGAATCTACTCTCCAT 39134
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
|||||||||||||| || || | ||||| || || || ||| ||||| ||| |
Sbjct 39387 ATGCAAATTTTTGTCAAGACTCTCACTGGAAAAACTATAACCCTGGAAGTTGAAGCATCG 39446
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
|| | ||| | || ||| |||||| ||| || ||||| | || |||||||
Sbjct 39447 GACACAATTGAAAACGTTAAAGCTAAAATTCGCGATAAGGAAGGTATCCCACCTGATCAA 39506
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||||| | |||| ||| || |||||||||||||| | || || ||| || ||
Sbjct 39507 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTCGTACACTGACCGACTATAAT 39566
Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469
|| ||||| |||||||| || ||| | |||
Sbjct 39567 ATTCAAAAGGAATCTACGCTGCATCTTGTA 39596
>seq5459
Length=1306269
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| || ||| | || || || ||||||||| |||| |||| |
Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | | | | || ||| ||||| ||||||||||| | || || ||
Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| | | || | ||| |||||||||||||||||| | ||| | ||||| ||
Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
||| || || || || ||||||||||| |||||||| | |||| |||
Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATTGAGACTCAGAGGGGGA 706330
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| || ||| || | || |||||||| ||| |||| |||| |
Sbjct 710103 AATGCAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTGGAGGTAGAAGCTTC 710044
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | | | | || ||| ||||| |||||||| || | | | || ||
Sbjct 710043 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGAGGGAATCTCTGCAGACCA 709984
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| | | || | ||| |||||||||||||||||| | |||| | |||| ||
Sbjct 709983 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCAGATTCTAA 709924
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
||| || || || || ||| |||||||||||||||| | ||||||||
Sbjct 709923 CATTCAGAAGGAGTCAACAATACATTTAGTATTGAGACTCAGAGGAGGA 709875
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| || ||| || | || |||||||| ||| | || |||| |
Sbjct 710559 AATGCAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTAGAGGTAGAAGCTTC 710500
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | | | | || ||| ||||| |||||||| || | | | || ||
Sbjct 710499 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGATGGAATCTCTGCAGACCA 710440
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| | | || | ||| |||||||||||||||||| | ||| | ||||| ||
Sbjct 710439 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 710380
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
||| || ||||| || ||| |||||||||||||||| | ||||||||
Sbjct 710379 CATTCAGAAAGAGTCAACAATACATTTAGTATTGAGACTCAGAGGAGGA 710331
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318
||||||||| ||||| |||||| || | || || ||||| ||| |||| |||| |
Sbjct 709875 AATGCAAATCTTTGTCAAAACACTGTCAGGAAAAACCATCACCTTGGAGGTAGAAGCTTC 709816
Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378
||| | | | | || ||| ||||| |||||||| || | | || || ||
Sbjct 709815 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGATGGAATCTCTGTAGACCA 709756
Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438
|| | | || | ||| ||||||||||| |||||| | |||| | ||||| ||
Sbjct 709755 GCAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTTCGGATTATAA 709696
Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487
||| || || || || ||| ||||||| |||||||| | |||| |||
Sbjct 709695 CATTCAGAAGGAGTCAACAATACATTTGGTATTGAGACTCAGAGGTGGA 709647
>seq3181
Length=1038259
Score = 86.0 bits (94), Expect = 5e-12
Identities = 133/190 (70%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319
||||| || ||||| ||||| ||||| || || ||||| ||| | ||| |||| |
Sbjct 488851 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACCATCACCCTTGAAGTAGAATCATCA 488910
Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379
||| || ||| | |||||| ||||| || ||||||||| | || ||||||
Sbjct 488911 GATACTATTGAAAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAA 488970
Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439
||| | || |||| ||| || || |||||||||||| || || ||||||||
Sbjct 488971 CAACGTCTCATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACCCTGTCAGATTACAAT 489030
Query 106440 ATACAAAAAG 106449
|| |||||||
Sbjct 489031 ATTCAAAAAG 489040
>seq1782
Length=598564
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432
||||||||| || | |||| ||| || ||||||||||||||| | |||| | ||
Sbjct 465934 TGATCAACAGAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGCAGAACTTTATCAGA 465875
Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486
||| || || ||||||||||||||| | |||||||| || | ||| |||| ||
Sbjct 465874 TTATAATATTCAAAAAGAATCTACATTGCATTTAGTGTTACGTTTAAGAGGTGG 465821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 401409669723488
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |