Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq4862 100 2e-16 seq5459 89.7 4e-13 seq3181 86.0 5e-12 seq1782 84.2 2e-11 >seq4862 Length=216935 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || ||| | ||||| ||||| ||||| ||||| |||| || Sbjct 39843 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCCTCT 39902 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 39903 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39962 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || || | ||| || ||||||||||||||| | || | || || || Sbjct 39963 CAAAGACTGATCTTTGCTGGAAAACAATTAGAAGATGGTCGTACGCTTTCTGACTATAAT 40022 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || |||||||||||||| || ||| | ||| Sbjct 40023 ATTCAAAAAGAATCTACCCTCCATCTTGTA 40052 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || | ||||| ||||| ||||| | ||| |||| || Sbjct 40070 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTAGAAGTAGAAGCCTC 40129 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 40130 TGATACAATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 40189 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 ||||| | || | ||| || |||||||||||||||| | || | ||| || || Sbjct 40190 GCAAAGATTGATCTTTGCTGGTAAACAATTAGAAGATTGTCGTACGCTTTCCGACTATAA 40249 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTA 106469 || |||||||||||||| || ||| | ||| Sbjct 40250 TATTCAAAAAGAATCTACCCTCCATCTTGTA 40280 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || | ||||| ||||| ||||| | ||| |||| || Sbjct 39615 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 39674 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || |||||||| | || |||||| Sbjct 39675 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAAGAAGGTATTCCACCGGATCAA 39734 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| || || | ||| || ||||| ||||||||| | || | ||||| || Sbjct 39735 CAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTTCAGATTATAAT 39794 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || |||||||||||||| || ||| | ||| Sbjct 39795 ATTCAAAAAGAATCTACCCTCCATCTTGTA 39824 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||||||||| || || | ||||| ||||| ||||| | ||| |||| | Sbjct 38702 AATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCATC 38761 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | ||| | || ||| |||||| || || ||||| | || |||||| Sbjct 38762 TGATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 38821 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 |||||| || || | ||| || ||||| ||||||||| | || | ||||| || Sbjct 38822 ACAAAGACTGATCTTTGCTGGAAAACAGTTAGAAGATGGTCGCACGCTTTCAGATTATAA 38881 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTA 106469 || |||||||||||||| || ||| | ||| Sbjct 38882 TATTCAAAAAGAATCTACCCTCCATCTTGTA 38912 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||||||||| || || ||| | ||||| ||||| ||||| ||||| |||| | Sbjct 38931 ATGCAAATTTTCGTCAAGACACTTACTGGAAAGACTATTACGCTGGAAGTAGAAGCATCT 38990 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | || ||| |||||| || || ||||| | || ||||||| Sbjct 38991 GATACGATTGAAAATGTTAAAGCCAAAATTCAAGATAAGGAAGGGATCCCTCCTGATCAA 39050 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGA--TTCTAAAACTATGGGCGATTACA 106437 ||||| | || | ||| || |||||||| ||||| || | ||| | ||||| | Sbjct 39051 CAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGTCGCACACTTT--CTGATTATA 39108 Query 106438 ACATACAAAAAGAATCTACACTACAT 106463 | || |||||||||||||| || ||| Sbjct 39109 ATATTCAAAAAGAATCTACTCTCCAT 39134 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| || || | ||||| || || || ||| ||||| ||| | Sbjct 39387 ATGCAAATTTTTGTCAAGACTCTCACTGGAAAAACTATAACCCTGGAAGTTGAAGCATCG 39446 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| | || ||| |||||| ||| || ||||| | || ||||||| Sbjct 39447 GACACAATTGAAAACGTTAAAGCTAAAATTCGCGATAAGGAAGGTATCCCACCTGATCAA 39506 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||| | |||| ||| || |||||||||||||| | || || ||| || || Sbjct 39507 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGACGGTCGTACACTGACCGACTATAAT 39566 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTA 106469 || ||||| |||||||| || ||| | ||| Sbjct 39567 ATTCAAAAGGAATCTACGCTGCATCTTGTA 39596 >seq5459 Length=1306269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || ||| | || || || ||||||||| |||| |||| | Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| ||||| ||||||||||| | || || || Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||||||||||||| | ||| | ||||| || Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || || || ||||||||||| |||||||| | |||| ||| Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATTGAGACTCAGAGGGGGA 706330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || ||| || | || |||||||| ||| |||| |||| | Sbjct 710103 AATGCAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTGGAGGTAGAAGCTTC 710044 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| ||||| |||||||| || | | | || || Sbjct 710043 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGAGGGAATCTCTGCAGACCA 709984 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||||||||||||| | |||| | |||| || Sbjct 709983 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACTCTTTCAGATTCTAA 709924 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || || || ||| |||||||||||||||| | |||||||| Sbjct 709923 CATTCAGAAGGAGTCAACAATACATTTAGTATTGAGACTCAGAGGAGGA 709875 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| || ||| || | || |||||||| ||| | || |||| | Sbjct 710559 AATGCAAATCTTTGTCAAGACACTGTCAGGAAAGACCATCACCTTAGAGGTAGAAGCTTC 710500 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| ||||| |||||||| || | | | || || Sbjct 710499 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGATGGAATCTCTGCAGACCA 710440 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| |||||||||||||||||| | ||| | ||||| || Sbjct 710439 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 710380 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || ||||| || ||| |||||||||||||||| | |||||||| Sbjct 710379 CATTCAGAAAGAGTCAACAATACATTTAGTATTGAGACTCAGAGGAGGA 710331 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 ||||||||| ||||| |||||| || | || || ||||| ||| |||| |||| | Sbjct 709875 AATGCAAATCTTTGTCAAAACACTGTCAGGAAAAACCATCACCTTGGAGGTAGAAGCTTC 709816 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 ||| | | | | || ||| ||||| |||||||| || | | || || || Sbjct 709815 TGATACAATAGAGAATGTAAAAGCTAAAATCCAAGACAAAGATGGAATCTCTGTAGACCA 709756 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 || | | || | ||| ||||||||||| |||||| | |||| | ||||| || Sbjct 709755 GCAGCGTTTGATCTTTGCTGGCAAACAATTGGAAGATGGGAGAACTCTTTCGGATTATAA 709696 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 ||| || || || || ||| ||||||| |||||||| | |||| ||| Sbjct 709695 CATTCAGAAGGAGTCAACAATACATTTGGTATTGAGACTCAGAGGTGGA 709647 >seq3181 Length=1038259 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| ||||| ||||| || || ||||| ||| | ||| |||| | Sbjct 488851 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACCATCACCCTTGAAGTAGAATCATCA 488910 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| || ||| | |||||| ||||| || ||||||||| | || |||||| Sbjct 488911 GATACTATTGAAAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAA 488970 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||| | || |||| ||| || || |||||||||||| || || |||||||| Sbjct 488971 CAACGTCTCATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACCCTGTCAGATTACAAT 489030 Query 106440 ATACAAAAAG 106449 || ||||||| Sbjct 489031 ATTCAAAAAG 489040 >seq1782 Length=598564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 106373 TGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGA 106432 ||||||||| || | |||| ||| || ||||||||||||||| | |||| | || Sbjct 465934 TGATCAACAGAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGCAGAACTTTATCAGA 465875 Query 106433 TTACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||| || || ||||||||||||||| | |||||||| || | ||| |||| || Sbjct 465874 TTATAATATTCAAAAAGAATCTACATTGCATTTAGTGTTACGTTTAAGAGGTGG 465821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401409669723488