Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq731 226 4e-54 seq967 149 9e-31 >seq731 Length=568950 Score = 226 bits (250), Expect = 4e-54 Identities = 225/289 (78%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 68643 TATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAG 68702 ||||||| |||||| || || |||||||| | ||||| || |||||| ||| | | Sbjct 414507 TATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCTTTCAGTTAAATCTCGCAACAA 414566 Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || |||||||| || || || || ||||| | || |||||||||||||| Sbjct 414567 ATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTTCTTGTATAAATATTACTGGT 414626 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||||||||| | ||| ||||||||||||| |||||| ||||| ||||| ||||||||||| Sbjct 414627 ATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCAGTAGATGCTGTTGGCATAGG 414686 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATG-TTTCC 68881 ||| | | |||| ||||| || ||||||| | ||||| |||||| ||| ||||| Sbjct 414687 TGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATTTTTGCTTTTA-ATGTTTTCC 414745 Query 68882 AATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 ||||||| | ||| | ||| ||||||||| | || ||||||| ||| Sbjct 414746 AATCCCATAAATCTGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 414794 Score = 190 bits (210), Expect = 3e-43 Identities = 231/312 (74%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || |||||||||||||||||||| | ||| || | |||||| | |||||||||||||| | Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 ||||| || | |||| |||| ||||||||| || ||||| | |||| || || ||| Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 ||||| ||||| | ||| ||||| | |||||||||| |||| ||| |||| || Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 416074 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 | |||||||| |||||| | | | || || || || || ||| |||| || Sbjct 416075 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCCGATTTACTAATA 416134 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAG 69959 || ||||| ||| ||||| | |||||| || || |||||||||||| || |||||| Sbjct 416135 AGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAAT 416194 Query 69960 AAGAAAACAGCT 69971 || |||||| || Sbjct 416195 AA-AAAACAACT 416205 Score = 118 bits (130), Expect = 1e-21 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565 |||| ||| ||| |||||||| ||||||||||||| | |||||| |||| | ||||| Sbjct 415640 TATAAAGC--TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGAC 415697 Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625 |||| || ||| |||| || | ||||||||||||||| ||||| || ||||| | Sbjct 415698 ACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATA 415757 Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669 ||| ||| | ||||| | |||||||||||| || |||||| Sbjct 415758 AAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCTGTA 415801 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGC 69008 ||| ||||| |||||||| | |||| || ||||| || ||||| || || ||||| || Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993 Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAA 69068 || |||||| | ||||| || |||| |||| || | ||||| ||| ||| || || Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053 Query 69069 TGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 |||||| | | | || |||||||||||| | || ||||| |||||||| Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104 Score = 109 bits (120), Expect = 8e-19 Identities = 192/276 (70%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019 ||||| || ||||||||||| || |||||||| | ||| ||| | ||| |||||||| Sbjct 416261 AAGAATAC--CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGC 416318 Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CC 70078 || || || | ||| || | | ||| || ||||| ||| || |||||| || | Sbjct 416319 ATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTC 416378 Query 70079 ACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTAT 70138 || ||| || | | || || | ||| |||||||| || |||| ||| || ||| Sbjct 416379 AC-CATGGATGGCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCC 416437 Query 70139 TATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAA 70198 || |||||| | | ||| |||| || ||||| || ||||||||||| || | Sbjct 416438 CATGTATTTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGA 416497 Query 70199 AGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234 ||||||| || ||||| || |||| |||| |||| Sbjct 416498 AGTCTCTATCATAAATTATTGCAGAGTTTAACTTAT 416533 Score = 104 bits (114), Expect = 3e-17 Identities = 217/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGA-ACTTTCAGCTTCTGGAATAGGATAATAATTA 69174 |||| |||||||||||| | |||||| ||||| || |||| ||| ||||||||||| Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTT-GCCTCTGAAATCGGATAATAATTG 415238 Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234 | || |||| ||| | | ||| || || | ||| ||| || || || || Sbjct 415239 ACGTCGATAACTTTGTCTAAATTACGCGTAACAATTTTTGTCACTTCTCGAAGCTTTTGA 415298 Query 69235 AAATCAAATCGTCCATCTATAA-------CAAACATATTCAGTGCTACAGATGCTAGATT 69287 |||||| || |||| ||| | |||||||||| | || | || |||| ||| Sbjct 415299 AAATCATAT-GTCCTATTATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAATT 415357 Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347 || ||||| | ||||| | | | | ||| | || || || ||||| | ||||||||| Sbjct 415358 GCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTACA 415417 Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407 ||||| || |||| ||||| ||||| || || || || || ||||| || Sbjct 415418 CTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGCAT 415477 Query 69408 AAACGGAGTACCAGTTTCAA 69427 | | ||||| || ||||||| Sbjct 415478 ATAAGGAGTTCCTGTTTCAA 415497 >seq967 Length=1612715 Score = 149 bits (164), Expect = 9e-31 Identities = 168/225 (75%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||| ||| |||||| || || || | | ||||||||||||||| | ||||| || || Sbjct 653249 ATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACATTTTCCATGGC 653190 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996 | ||||| || |||||||| | ||| || || | ||||| ||| || ||||| ||| Sbjct 653189 AACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGACTAAATCGTTC 653130 Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056 | | ||||||||| |||||||||||| ||| ||||||||||| |||||||| || Sbjct 653129 AACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAATACATGAGATAT 653070 Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 ||||| ||| |||| | || || |||||||||| ||||| Sbjct 653069 AAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025 Score = 109 bits (120), Expect = 8e-19 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||||| ||| | ||| ||| |||||| ||||| ||||||||||| | || | Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| ||||| ||||||||| ||| |||||| || |||||||| || ||||||| Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440 Query 39759 CAACAAGTCTCTCTCCGTAA--CTTG---TATCATTATGTATCCACTTCTGTGCCCAATC 39813 |||| | | | ||| | || | | | || | | ||||| || |||||| | Sbjct 653439 CAACCA--CACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTT 653382 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||||||||| ||||| |||| |||| || || ||||| Sbjct 653381 AGCTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAA 653340 Score = 104 bits (114), Expect = 3e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| | | ||||||||| || ||||||||||||||||||||| || ||| ||| Sbjct 653887 TTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATA 653828 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | || || ||||| ||||| | || ||| || | ||| || |||| ||| |||| ||| Sbjct 653827 AGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCA 653768 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601 || | || || ||| | || || ||||| ||| || | ||| || | | Sbjct 653767 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATAATG 653708 Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 ||||| |||||||| || ||||| || ||||||| |||| Sbjct 653707 TGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685297904414040