Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq731 226 4e-54
seq967 149 9e-31
>seq731
Length=568950
Score = 226 bits (250), Expect = 4e-54
Identities = 225/289 (78%), Gaps = 2/289 (1%)
Strand=Plus/Plus
Query 68643 TATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAG 68702
||||||| |||||| || || |||||||| | ||||| || |||||| ||| | |
Sbjct 414507 TATAATTTCATTCTTCATATCCTCATTCCAAAGATTTCTTTCAGTTAAATCTCGCAACAA 414566
Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762
||| ||||| || |||||||| || || || || ||||| | || ||||||||||||||
Sbjct 414567 ATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTTCTTGTATAAATATTACTGGT 414626
Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822
||||||||| | ||| ||||||||||||| |||||| ||||| ||||| |||||||||||
Sbjct 414627 ATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCAGTAGATGCTGTTGGCATAGG 414686
Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATG-TTTCC 68881
||| | | |||| ||||| || ||||||| | ||||| |||||| ||| |||||
Sbjct 414687 TGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATTTTTGCTTTTA-ATGTTTTCC 414745
Query 68882 AATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930
||||||| | ||| | ||| ||||||||| | || ||||||| |||
Sbjct 414746 AATCCCATAAATCTGTTGGAGTAACATTCCACATGTCATATTGTAAAAT 414794
Score = 190 bits (210), Expect = 3e-43
Identities = 231/312 (74%), Gaps = 2/312 (1%)
Strand=Plus/Plus
Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720
|| |||||||||||||||||||| | ||| || | |||||| | |||||||||||||| |
Sbjct 415895 TTACCTGTATTTTTTTTAAGATCTAAAAATTCAAAAATATCTGCATGCCATGGTTCTACA 415954
Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780
||||| || | |||| |||| ||||||||| || ||||| | |||| || || |||
Sbjct 415955 TATATAGCAAATGCTCCTGGTCTTTTATTTCCACCTTGATCAACATATCGCGCTGTATTA 416014
Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840
||||| ||||| | ||| ||||| | |||||||||| |||| ||| |||| ||
Sbjct 416015 TTATATACTCTGATCATAGGAATCAAACCATTAGATACACCAAGTGTACCAGCTATTGGT 416074
Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900
| |||||||| |||||| | | | || || || || || ||| |||| ||
Sbjct 416075 GTACCTCTTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCCGATTTACTAATA 416134
Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA-TGTTAAG 69959
|| ||||| ||| ||||| | |||||| || || |||||||||||| || ||||||
Sbjct 416135 AGTGCACACTTTTTTAATGTATTATATATTCCTTCAATGCTATCATCTTCCATTGTTAAT 416194
Query 69960 AAGAAAACAGCT 69971
|| |||||| ||
Sbjct 416195 AA-AAAACAACT 416205
Score = 118 bits (130), Expect = 1e-21
Identities = 125/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 69506 TATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGAC 69565
|||| ||| ||| |||||||| ||||||||||||| | |||||| |||| | |||||
Sbjct 415640 TATAAAGC--TTCAAATTCATCGCCCCAAACATCATGTAGACCAGGAGATTCGTGTGGAC 415697
Query 69566 ACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCCAAA 69625
|||| || ||| |||| || | ||||||||||||||| ||||| || ||||| |
Sbjct 415698 ACATTAAACTCCATTTTTCATTATTCAAAACTCGTTTCATAAAAAGATCAGGTATCCATA 415757
Query 69626 GAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTA 69669
||| ||| | ||||| | |||||||||||| || ||||||
Sbjct 415758 AAGCATAAAATAATTCTCTTGCTCTATTTTCTTCCTTACCTGTA 415801
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68949 TCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGC 69008
||| ||||| |||||||| | |||| || ||||| || ||||| || || ||||| ||
Sbjct 414934 TCCTTTATAGGTTTCATATGTACCTTTCTCCTCAGCAAGCTCACAGCTAGCTTCTAAAGC 414993
Query 69009 ACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAA 69068
|| |||||| | ||||| || |||| |||| || | ||||| ||| ||| || ||
Sbjct 414994 ACTGTAATATAACGTTTCAAATATCTGGATATTAAGCTTCTGTGCCTCTTCACTTTCAAA 415053
Query 69069 TGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119
|||||| | | | || |||||||||||| | || ||||| ||||||||
Sbjct 415054 TGGATATCGCATTAAAAGAAATGCATCTGCAAGACCTTGAACTCCAATACC 415104
Score = 109 bits (120), Expect = 8e-19
Identities = 192/276 (70%), Gaps = 4/276 (1%)
Strand=Plus/Plus
Query 69960 AAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGC 70019
||||| || ||||||||||| || |||||||| | ||| ||| | ||| ||||||||
Sbjct 416261 AAGAATAC--CTAGACATTTGTTGTTGTATAGTACATGCAGAAAAAAGTGTTGGAGATGC 416318
Query 70020 GTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CC 70078
|| || || | ||| || | | ||| || ||||| ||| || |||||| || |
Sbjct 416319 ATGTGTAAAATAACGTTCTGATAAAAAATTATAAGTTTCTATAACTCTTTCTATGTCTTC 416378
Query 70079 ACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTAT 70138
|| ||| || | | || || | ||| |||||||| || |||| ||| || |||
Sbjct 416379 AC-CATGGATGGCAACTGCAACTCTCATTAACATATGTTGTGGTCTTTCAACAACTTTCC 416437
Query 70139 TATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAA 70198
|| |||||| | | ||| |||| || ||||| || ||||||||||| || |
Sbjct 416438 CATGTATTTTTAGTAAGTAACTCCTTTCAAGCGTTTTGAAACCAAAATAGTTATAGCTGA 416497
Query 70199 AGTCTCTTTCGTAAATAATAACAGAATTTAGTTTAT 70234
||||||| || ||||| || |||| |||| ||||
Sbjct 416498 AGTCTCTATCATAAATTATTGCAGAGTTTAACTTAT 416533
Score = 104 bits (114), Expect = 3e-17
Identities = 217/320 (68%), Gaps = 10/320 (3%)
Strand=Plus/Plus
Query 69116 TACCGATAGGTCTATGTCTCTTATTTGA-ACTTTCAGCTTCTGGAATAGGATAATAATTA 69174
|||| |||||||||||| | |||||| ||||| || |||| ||| |||||||||||
Sbjct 415180 TACCCATAGGTCTATGTTTAAAATTTGATACTTTT-GCCTCTGAAATCGGATAATAATTG 415238
Query 69175 ATATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGA 69234
| || |||| ||| | | ||| || || | ||| ||| || || || ||
Sbjct 415239 ACGTCGATAACTTTGTCTAAATTACGCGTAACAATTTTTGTCACTTCTCGAAGCTTTTGA 415298
Query 69235 AAATCAAATCGTCCATCTATAA-------CAAACATATTCAGTGCTACAGATGCTAGATT 69287
|||||| || |||| ||| | |||||||||| | || | || |||| |||
Sbjct 415299 AAATCATAT-GTCCTATTATCAGAATTTACAAACATATTTACAGCAATTGAGGCTAAATT 415357
Query 69288 ACAAACTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACA 69347
|| ||||| | ||||| | | | | ||| | || || || ||||| | |||||||||
Sbjct 415358 GCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTACACAAATTACTACA 415417
Query 69348 TTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAAT 69407
||||| || |||| ||||| ||||| || || || || || ||||| ||
Sbjct 415418 CTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGATCTTTATAAAGCAT 415477
Query 69408 AAACGGAGTACCAGTTTCAA 69427
| | ||||| || |||||||
Sbjct 415478 ATAAGGAGTTCCTGTTTCAA 415497
>seq967
Length=1612715
Score = 149 bits (164), Expect = 9e-31
Identities = 168/225 (75%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||| ||| |||||| || || || | | ||||||||||||||| | ||||| || ||
Sbjct 653249 ATCTGTAATATATGTGTCAATCAATAAAGAATACATTTCTGAATGTACATTTTCCATGGC 653190
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTC 39996
| ||||| || |||||||| | ||| || || | ||||| ||| || ||||| |||
Sbjct 653189 AACTTGAAAGCCATAAAAACAACGTGCCTCTGTTACCTGTACTTCTTGACTAAATCGTTC 653130
Query 39997 CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAAT 40056
| | ||||||||| |||||||||||| ||| ||||||||||| |||||||| ||
Sbjct 653129 AACAAGATTTTCATTAACTATTCCATCAGAAGCAGCAAAAAATGCTAATACATGAGATAT 653070
Query 40057 AAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
||||| ||| |||| | || || |||||||||| |||||
Sbjct 653069 AAAATGTTTCTCATTGTCAGTTAAACGATTCCAGTCAAATATATC 653025
Score = 109 bits (120), Expect = 8e-19
Identities = 159/222 (72%), Gaps = 7/222 (3%)
Strand=Plus/Minus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||| |||||| ||| | ||| ||| |||||| ||||| ||||||||||| | || |
Sbjct 653559 CCTCGTCTCTAGAAATAAGTTCATTACTAAATGTAAGTCCTGGCATTAGACCTCTTTTCT 653500
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| ||||| ||||| ||||||||| ||| |||||| || |||||||| || |||||||
Sbjct 653499 TTAGCCAGAATATAGCAGCAAAACTGCCACTAAAGAAAATACCTTCTACCGCAGCAAATG 653440
Query 39759 CAACAAGTCTCTCTCCGTAA--CTTG---TATCATTATGTATCCACTTCTGTGCCCAATC 39813
|||| | | | ||| | || | | | || | | ||||| || |||||| |
Sbjct 653439 CAACCA--CACGCTCAGGAAAGGTCGCACTTTCGTGAGTAATCCAATTTAATGCCCAGTT 653382
Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855
||||||||| ||||| |||| |||| || || |||||
Sbjct 653381 AGCTTTCTTTGCGACACATGGCAAATTTTCGATCGCGTTAAA 653340
Score = 104 bits (114), Expect = 3e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481
|||| | | ||||||||| || ||||||||||||||||||||| || ||| |||
Sbjct 653887 TTTTGACAGCCTAATTCTATAAGCAATCTATCTGCAACAAATTCAATATATTGGCACATA 653828
Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541
| || || ||||| ||||| | || ||| || | ||| || |||| ||| |||| |||
Sbjct 653827 AGTTTGCAGTTCATGCCTATCATTTCAACAGGCAAAGCTTCTGTTAAAAATTCTTGTTCA 653768
Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAA 39601
|| | || || ||| | || || ||||| ||| || | ||| || | |
Sbjct 653767 ATTTTGACAGCATCTTTAATAATTGATGTGACTCGATCCGGAGGTGGTTTTTGTATAATG 653708
Query 39602 TGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641
||||| |||||||| || ||||| || ||||||| ||||
Sbjct 653707 TGTTTGAACATTAAACATGCGAAATCGCAATGTAACCCCT 653668
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 685297904414040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |