Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq967 138 9e-28 seq4103 132 4e-26 seq5123 120 2e-22 >seq967 Length=1612715 Score = 138 bits (152), Expect = 9e-28 Identities = 150/198 (76%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 43825 ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAG 43883 |||| || ||||||||||||||| || || || ||||||||||| || || |||| Sbjct 653053 ACAATGAGAAACATTTTATATCTCATGTATTAGCATTTTTTGCTGCTTCTGATGGAATAG 653112 Query 43884 TCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTT 43943 | ||||||||| | ||| || ||| |||||||| || || |||| ||||| |||| Sbjct 653113 TTAATGAAAATCTTGTTGAACGATTTAGTCAAGAAGTACAGGTAACAGAGGCACGTTGTT 653172 Query 43944 TTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAG 44003 ||||||| |||||| ||||||| |||||| | ||||| |||||||| | | |||| | Sbjct 653173 TTTATGGCTTTCAAGTTGCCATGGAAAATGTACATTCAGAAATGTATTCTTTATTGATTG 653232 Query 44004 ATACGTACATCAAAGATG 44021 | || || || | ||||| Sbjct 653233 ACACATATATTACAGATG 653250 >seq4103 Length=935674 Score = 132 bits (146), Expect = 4e-26 Identities = 215/308 (70%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| || | || | ||| |||||| ||| || |||||| ||| || || Sbjct 430087 CCAGATTGGGATTTTCAAAAAATGGGAATTGGTGGACTGGATAAAGAATTTAGTGCTATT 430028 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 || || |||||||| | || || |||||| | |||| | ||| |||||||| ||| Sbjct 430027 TTCCGAAGAGCATTCGCATCTCGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGTTGT 429968 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || |||||| ||| |||| |||||||| ||||| ||| || ||||||||||| || Sbjct 429967 AAGCATGTTAAAGGAATTTTACTTTATGGTCCACCAGGTACAGGTAAAACATTAATGGCA 429908 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || | | || ||| | | | | ||||| |||||||| ||||| ||| || Sbjct 429907 CGGCAAATAGGAACTATGTTAAATGCTAGAGAACCT---AAAATTGTCAATGGCCCTCAA 429851 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || | |||||||| || || |||| ||| | || | || |||||||| ||| Sbjct 429850 ATTTTGGACAAATATGTTGGAGAAAGTGAAGCTAATATTAGAAGATTATTTGCTGATGCT 429791 Query 19513 GAAGAAGA 19520 ||||| || Sbjct 429790 GAAGAGGA 429783 >seq5123 Length=351926 Score = 120 bits (132), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 40702 TAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGGTTTATCAAAG 40761 |||| |||||| | | ||||||| |||| ||| |||||| ||||||||||||| | | Sbjct 332163 TAACAACAAAACGAGTATTTTGGAGAGGCGTTGTGGAAGAATTGTTATGGTTTATTAGGG 332222 Query 40762 GTTGTACTAATGCTAAGAAATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTT 40821 | | || ||||| || | ||| |||| ||| | ||||||||| ||| |||| | Sbjct 332223 GATCAACAAATGCAAAAGAGTTAAGTGAAAAAGGTATTCACATTTGGGATGAAAACAGCT 332282 Query 40822 CTAAAACATATTTGTCTAGCAT----AGGATTACAAGATAGGGATGAAGGTGATCTTGGT 40877 | || | | | | ||| | || || ||||||||| ||||| ||| | || Sbjct 332283 C----ACGTGTGTTTTTAGATTCTTCTGGTTTTACAGATAGGGAAGAAGGAGATTTAGGG 332338 Query 40878 CCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATAT 40919 ||||||||||||||||| | | |||||||||| ||||||||| Sbjct 332339 CCTGTTTATGGATTTCAATGGAGACATTTTGGTGCAAAATAT 332380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396547213254055