Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq4862 123 2e-23 seq3181 113 4e-20 seq731 98.7 8e-16 seq5459 91.5 1e-13 >seq4862 Length=216935 Score = 123 bits (136), Expect = 2e-23 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | |||||| || ||||||||||| |||||| ||| | || ||||||| Sbjct 39596 TACAAGATGCAGCGTAGATTCCTTTTGAATATTATAGTCGGTCAGTGTACGACCGTCTTC 39537 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || |||| | | |||||||| || || | ||| || |||||| Sbjct 39536 TAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCGCG 39477 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||| | | |||| | ||||| | ||||||||||| || ||||||| ||| Sbjct 39476 AATTTTAGCTTTAACGTTTTCAATTGTGTCCGATGCTTCAACTTCCAGGGTTATAGTTTT 39417 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| || ||||| ||||||||| Sbjct 39416 TCCAGTGAGAGTCTTGACAAAAATTTGCATA 39386 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| || || | |||| | ||||| Sbjct 39824 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTC 39765 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| || || | || || | ||||||||||| || | ||| |||||||| Sbjct 39764 TAACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTG 39705 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | |||| | || || | |||||| ||||| || || |||| || Sbjct 39704 AATTTTGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTT 39645 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 39644 TCCAGTAAGGGTCTTGACAAAAATTTGCATA 39614 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| || || | |||| | ||||| Sbjct 40508 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTC 40449 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 |||||||||||||| | || | | ||| ||||| || || | ||| || ||||| Sbjct 40448 TAGCTGTTTACCGGCAAATATCAATCTCTGCTGATCTGGTGGAATACCTTCCTTATCTTG 40389 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | |||| | || || | |||||| ||||| || || |||| || Sbjct 40388 AATTTTGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCGAGCGTAATAGTCTT 40329 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || ||||| ||||||||| Sbjct 40328 TCCAGTAAGGGTCTTGACAAAAATTTGCATA 40298 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| |||||| | | || | ||||| Sbjct 34581 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTC 34522 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| || | || | | |||||||| || || | ||| || ||||| Sbjct 34521 TAATTGTTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTG 34462 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || ||| | | |||| | || |||| || ||||| || || ||||| | ||| Sbjct 34461 AATTTTAGCTTTAACGTTTTCAATTGTATCTGATGCCTCAACCTCGAGGGTTATTGTTTT 34402 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| ||||| || ||||| ||||| Sbjct 34401 GCCTGTCAGTGTTTTTACGAAGATCTGCAT 34372 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | |||||| || ||||||||||| || || | |||| | ||||| Sbjct 38456 TACAAGATGCAGCGTAGATTCCTTTTGAATATTATAATCAGAAAGCGTGCGACCATCTTC 38397 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || |||| | | |||||||| || || | ||| || ||||| Sbjct 38396 TAATTGTTTCCCAGCAAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTG 38337 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || || | | | || | || || | ||||||||||| | ||||||| ||| Sbjct 38336 AATTTTAGCCTTGACGTTCTCGATTGTATCAGAAGCTTCAACTTCCAAGGTTATAGTTTT 38277 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| |||||||| ||||||||| Sbjct 38276 CCCAGTGAGAGTCTTCACAAAAATTTGCATA 38246 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| ||||| | | || | ||||| Sbjct 40052 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCAGAAAGCGTACGACCATCTTC 39993 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || | || || | ||||||||||| || | ||| |||||||| Sbjct 39992 TAATTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCCGGTGGAATACCTTCTTTATCTTG 39933 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | |||| | || || | |||||| ||||| || || |||| || Sbjct 39932 AATTTTGGCTTTAACATTTTCAATCGTATCAGAGGCTTCTACTTCCAGCGTAATAGTCTT 39873 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || || || || ||||||||| Sbjct 39872 TCCAGTAAGTGTCTTGACGAAAATTTGCATA 39842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| |||||||||||||| |||||| | | || | ||||| | ||||| || Sbjct 40723 GTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTCTAATTGTTTCCCA 40664 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| | | |||||||| || || | ||| || ||||| || || || Sbjct 40663 GCAAAAATTAATCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTGAATTTTAGCCTTG 40604 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | || || | ||||||||||| ||||| |||| ||| || || ||||| Sbjct 40603 ACATTCTCGATTGTATCGGAAGCTTCAACTTCGAGAGTAATAGTTTTCCCAGTGAGAGTC 40544 Query 27231 TTCACAAAGATTTGCATA 27248 || ||||| ||||||||| Sbjct 40543 TTGACAAAAATTTGCATA 40526 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| |||||| | | || | ||||| Sbjct 38684 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACCATCTTC 38625 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||| || || |||| | | ||||| || || || | || || ||||| Sbjct 38624 TAATTGTTTTCCAGCAAAAATCAATCTTTGTTGGTCAGGTGGGATCCCTTCCTTATCTTG 38565 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || || || | | | || | || || | ||||||||||| | ||||||| ||| Sbjct 38564 AATTTTAGCCTTGACGTTCTCGATTGTATCAGAAGCTTCAACTTCCAAGGTTATAGTTTT 38505 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || ||||| |||||||| ||||||||| Sbjct 38504 CCCAGTGAGAGTCTTCACAAAAATTTGCATA 38474 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| || || | |||| | ||||| Sbjct 38912 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAATCTGAAAGCGTGCGACCATCTTC 38853 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||| || || | || || | |||||||| || || | ||| || ||||| Sbjct 38852 TAACTGTTTTCCAGCAAAGATCAGTCTTTGTTGATCAGGTGGAATACCTTCCTTATCTTG 38793 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | |||| | || || | ||||| ||||| || || |||| || Sbjct 38792 AATTTTGGCTTTAACATTTTCAATCGTATCAGATGCTTCTACTTCGAGCGTAATAGTCTT 38733 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || ||||| |||||||| Sbjct 38732 TCCAGTAAGGGTCTTGACAAAAATTTGCAT 38703 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| | ||| | ||||| |||||||||||||| |||||| | | || ||||| Sbjct 40280 TACAAGATGGAGGGTAGATTCTTTTTGAATATTATAGTCGGAAAGCGTACGACAATCTTC 40221 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | |||||||| || | || | | || ||||| || || | ||| || ||||| Sbjct 40220 TAATTGTTTACCAGCAAAGATCAATCTTTGCTGATCAGGTGGAATACCTTCCTTATCTTG 40161 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 || ||| ||| | |||| | || || | |||||| |||||||| || |||| || Sbjct 40160 AATTTTGGCTTTAACATTTTCAATTGTATCAGAGGCTTCTACTTCTAGCGTAATAGTCTT 40101 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || ||||| |||||||| Sbjct 40100 TCCAGTAAGGGTCTTGACAAAAATTTGCAT 40071 >seq3181 Length=1038259 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||||||||||||||| || || | | || | ||||| | || || || || ||| Sbjct 489040 CTTTTTGAATATTGTAATCTGACAGGGTACGTCCATCTTCTAATTGCTTTCCAGCAAAAA 488981 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 ||||||| |||||||| || || | || |||||||| ||| || ||||| ||| Sbjct 488980 TGAGACGTTGTTGATCTGGTGGAATGCCTTCTTTATCTTGGATTTTAGCTTTCACATTTT 488921 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||| |||| | ||| ||||| || || || | ||| ||||||| ||||||||||| Sbjct 488920 CAATAGTATCTGATGATTCTACTTCAAGGGTGATGGTTTTACCCGTCAAAGTTTTCACAA 488861 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 488860 ATATCTGCAT 488851 >seq731 Length=568950 Score = 98.7 bits (108), Expect = 8e-16 Identities = 189/277 (68%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 131210 GGATAAAGGTTAATGTCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTT 131269 |||||| || | ||| || | ||||| |||||| ||| ||||||| ||| || || Sbjct 415227 GGATAATAATTGACGTCGATAACTTTGTCTAAATTACGCGTAACAATTTTTGTCAC--TT 415284 Query 131270 TTCAAT--TTGTCGAAATCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATA 131327 || | || | |||||| | || | | | || |||||||| ||||||| | Sbjct 415285 CTCGAAGCTTTTGAAAATCATATGTCCTATTATCAGAATTTACAAACATATTTACAGCAA 415344 Query 131328 TTGACGCCAGATTACAAACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGC 131387 |||| || | ||| || ||||| |||| | | |||||| |||||||| | | Sbjct 415345 TTGAGGCTAAATTGCACACTGCAATTTCATTTGGACTAGAATACTCTACAATTTCAGTAC 415404 Query 131388 ACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGT 131447 |||||||||| | ||| || || |||||||||| ||||| |||| ||| ||| | Sbjct 415405 ACAAATTACTACACTTGATTGTTCCCAAATTTTTATGATTTGATTTACGATTGCAATGAT 415464 Query 131448 CCTTGTACATCATGTAGGGCGTGCCCGTTTCGACTTG 131484 | || || | ||| || || || || ||||| ||||| Sbjct 415465 CTTTATAAAGCATATAAGGAGTTCCTGTTTCAACTTG 415501 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/230 (69%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 130744 CAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCT 130803 ||||||| ||| | ||||||||| || || | || || | ||| ||||| || || Sbjct 414564 CAAATGAGGATTTACGATTTGAAACTCTCCTGACAAAACTCTTCTTGTATAAATATTACT 414623 Query 130804 CGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCAT 130863 || | ||||| | || || || || || || |||||||| |||| ||| || ||||| Sbjct 414624 GGTATATGGTTCTATAGACTCATTATTTCCCAAAATTTGTGCAGTAGATGCTGTTGGCAT 414683 Query 130864 GTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATC 130923 ||| | || || |||||| |||| ||| || | | |||||| || ||| | Sbjct 414684 AGGTGCAATTAGTAAAGAATTTCGAATACCATGTTTAGCAATTTTTGCTTTTAATGTTTT 414743 Query 130924 CCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTGTA 130973 ||||||||||| | || || | ||| |||||||| ||| |||||| Sbjct 414744 CCAATCCCATAAATCTGTTGGAGTAACA---TTCCACATGTCATATTGTA 414790 >seq5459 Length=1306269 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 ||||| |||||||| || || | || | |||||| ||||| || || | || || ||| Sbjct 721155 TCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGATCAGGAGGGATTCCTTCCTTA 721214 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||| ||||| | |||| ||||| | ||||| ||||| | || || Sbjct 721215 TCTTGTATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAGGTGATG 721274 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || ||||| |||||||||||||||||||| Sbjct 721275 GTTTTCCCTGTCAGTGTTTTCACAAAGATTTGCAT 721309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423962783643432