Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09] 187,611 sequences; 596,278,454 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4862 116 2e-21 seq3181 104 2e-17 seq5459 102 5e-17 seq1023 89.7 3e-13 >seq4862 Length=216935 Score = 116 bits (128), Expect = 2e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || ||||| || ||||| || || || |||||||| || || | Sbjct 40299 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 40358 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||||| | ||||| | |||| || || || |||||| | || |||||||| Sbjct 40359 GATACGATTGAAAATGTTAAAGCCAAAA-TTCAAGATAAGGAAGGTATTCCACCAGATCA 40417 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || ||||||||||| ||||| || ||||| | ||||| | ||||| || Sbjct 40418 GCAGAGATTGATATTTGCCGGTAAACAGCTAGAAGATGGTCGCACGCTTTCTGATTATAA 40477 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 40478 TATTCAAAAAGAATCTAC 40495 Score = 95.1 bits (104), Expect = 8e-15 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || || || ||||| || ||||| || |||||||||||||| | | Sbjct 40527 ATGCAAATTTTTGTCAAGACTCTCACTGGGAAAACTATTACTCTCGAAGTTGAAGCTTCC 40586 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | |||||| || || |||||| | || || ||||| Sbjct 40587 GATACAATCGAGAATGTCAAGGC-TAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 40645 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | ||||| ||||| || |||||| | ||||| | || || | ||| || || Sbjct 40646 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTCGTACGCTTTCCGACTATAA 40705 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820 || |||||||| || || | ||| | ||| Sbjct 40706 TATTCAAAAAGAATCTACCCTCCATCTTGTT 40736 >seq3181 Length=1038259 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | ||||| ||||| ||||| || ||||| || || | Sbjct 488851 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACCATCACCCTTGAAGTAGAATCATCA 488910 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| |||||| | ||| ||||| || |||||||| | || ||||||||| Sbjct 488911 GATACTATTGAAAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAA 488970 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || ||||| || || ||| | ||||| | ||| || | |||||||| Sbjct 488971 CAACGTCTCATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACCCTGTCAGATTACAAT 489030 Query 23791 ATACAAAAAG 23800 || ||||||| Sbjct 489031 ATTCAAAAAG 489040 >seq5459 Length=1306269 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || || ||||| |||||||| || || | || || || | | Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | |||| ||||| ||||| ||||||||||| | || ||||| || Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || ||||| ||||||||| | ||||| | | || | ||||| || Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| ||| ||||||| || || || | |||| ||| Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATTGAGACTCAGAGGGGGA 706330 Score = 102 bits (112), Expect = 5e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || ||||| || | || |||||||| |||||| | || ||||| | Sbjct 721540 AACATGCAGATCTTTGTTAAGACATTAACAGGAAAAACCATCACTTTAGAGGTTGAAGCT 721481 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| ||||| ||||| ||||||||||| | || || ||| Sbjct 721480 TCTGACACAATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCTGAT 721421 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || ||||| || || || |||||||| | ||||| | | | || | ||||| Sbjct 721420 CAGCAACGTTTGATCTTCGCTGGCAAACAGTTAGAAGATGGAAGAACCCTTTCAGATTAT 721361 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||||| ||||| || | || || || || || | | |||||| Sbjct 721360 AACATCCAAAAGGAGTCAACTCTCCACTTGGTATTGAGACTCAGGGGAGGA 721310 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || || || |||||||| || ||||| ||||| | || || || | | Sbjct 706102 AATGCAAATCTTTGTAAAGACCCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCTTC 706043 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || | || ||| | || |||| | | ||||||||||| | || ||||| | Sbjct 706042 TGATACAATAGAGAATGTGAAGGCAAAGA-TCCAAGACAAAGAAGGAATCCCTCCAGACC 705984 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||||| || || ||||| |||||||| | ||||| | | | ||| | ||||| | Sbjct 705983 AGCAGCGCTTGATCTTTGCTGGCAAACAGTTAGAAGATGGAAGAACTCTTTCAGATTATA 705924 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 |||| || || ||||| ||| ||||||| || || || Sbjct 705923 ACATTCAGAAGGAGTCAACACTACATTTGGTATTGAG 705887 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||||||||| |||||||| || ||||| ||||| | || || || | Sbjct 710789 AACATGCAGATTTTCGTTAAGACCCTCACAGGGAAAACTATCACCTTGGAGGTAGAAGCT 710730 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | ||| || || |||||||| | | || || Sbjct 710729 TCTGATACAATAGAGAATGTGAAGGC-AAAGATCCAAGATAAAGAAGGAATTCTCCCTGA 710671 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || || || || ||||| || ||||| || ||||| | | | || | ||||| Sbjct 710670 TCAGCAACGATTGATCTTTGCTGGGAAACAGCTAGAAGATGGAAGAACCCTTTCAGATTA 710611 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || || ||||| ||| | ||||| || || || | |||||||| Sbjct 710610 TAACATTCAGAAGGAGTCAACACTCCATTTGGTATTGAGACTCAGAGGAGGA 710559 >seq1023 Length=1865667 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| ||||| || || | || ||| | || || | |||||| || || Sbjct 1592295 ACATAATCTTGTCCTTGAACCATTAATAGGTAATAGCACTTAGAAAACCACTTTGCATGT 1592354 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | |||||| || || |||| ||||||||| || || || || | || | | |||| Sbjct 1592355 TGCTCCCAAGGATCATCTTCAGGTTCCCAATCCTTTAAGCCACCTCCACAATGATAACAT 1592414 Query 32946 ACAACTTTG-TCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTT 33004 | || |||| || || |||| ||||| |||| || || |||||||||||| | | Sbjct 1592415 A-AAGTTTGATCACCAGTTCCAGTATAATAAAAGCCTGCATCTGCTAATTGTTCCTTTGT 1592473 Query 33005 CTGTTGCAAAGATTTTGGCCA 33025 ||| ||| |||||||||||| Sbjct 1592474 TTGTGGCATAGATTTTGGCCA 1592494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337236737986388