Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eufriesea_20mexicana_20[refseq_20GCF_5F001483705.1_202016-05-09]
187,611 sequences; 596,278,454 total letters
Query= NC_029997.1
Length=105667
Score E
Sequences producing significant alignments: (Bits) Value
seq4862 116 2e-21
seq3181 104 2e-17
seq5459 102 5e-17
seq1023 89.7 3e-13
>seq4862
Length=216935
Score = 116 bits (128), Expect = 2e-21
Identities = 146/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || ||||| || ||||| || || || |||||||| || || |
Sbjct 40299 ATGCAAATTTTTGTCAAGACCCTTACTGGAAAGACTATTACGCTCGAAGTAGAAGCCTCT 40358
Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || |||||| | ||||| | |||| || || || |||||| | || ||||||||
Sbjct 40359 GATACGATTGAAAATGTTAAAGCCAAAA-TTCAAGATAAGGAAGGTATTCCACCAGATCA 40417
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | || ||||||||||| ||||| || ||||| | ||||| | ||||| ||
Sbjct 40418 GCAGAGATTGATATTTGCCGGTAAACAGCTAGAAGATGGTCGCACGCTTTCTGATTATAA 40477
Query 23790 CATACAAAAAGAGTCCAC 23807
|| |||||||| || ||
Sbjct 40478 TATTCAAAAAGAATCTAC 40495
Score = 95.1 bits (104), Expect = 8e-15
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
||||| ||||| || || || ||||| || ||||| || |||||||||||||| | |
Sbjct 40527 ATGCAAATTTTTGTCAAGACTCTCACTGGGAAAACTATTACTCTCGAAGTTGAAGCTTCC 40586
Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | || ||| | || | |||||| || || |||||| | || || |||||
Sbjct 40587 GATACAATCGAGAATGTCAAGGC-TAAAATTCAAGATAAGGAAGGTATTCCACCTGATCA 40645
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
||| | ||||| ||||| || |||||| | ||||| | || || | ||| || ||
Sbjct 40646 ACAAAGATTAATTTTTGCTGGGAAACAATTAGAAGATGGTCGTACGCTTTCCGACTATAA 40705
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTT 23820
|| |||||||| || || | ||| | |||
Sbjct 40706 TATTCAAAAAGAATCTACCCTCCATCTTGTT 40736
>seq3181
Length=1038259
Score = 104 bits (114), Expect = 2e-17
Identities = 137/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670
|||||||| || || ||||| | ||||| ||||| ||||| || ||||| || || |
Sbjct 488851 ATGCAGATATTTGTGAAAACTTTGACGGGTAAAACCATCACCCTTGAAGTAGAATCATCA 488910
Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730
|| ||| |||||| | ||| ||||| || |||||||| | || |||||||||
Sbjct 488911 GATACTATTGAAAATGTGAAAGCTAAAATCCAAGATAAAGAAGGCATTCCACCAGATCAA 488970
Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790
|| ||| | || ||||| || || ||| | ||||| | ||| || | ||||||||
Sbjct 488971 CAACGTCTCATTTTTGCTGGAAAGCAATTAGAAGATGGACGTACCCTGTCAGATTACAAT 489030
Query 23791 ATACAAAAAG 23800
|| |||||||
Sbjct 489031 ATTCAAAAAG 489040
>seq5459
Length=1306269
Score = 102 bits (112), Expect = 5e-17
Identities = 160/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || || ||||| |||||||| || || | || || || | |
Sbjct 706558 AATGCAAATCTTTGTCAAGACACTCACAGGAAAAACCATTACCTTGGAGGTAGAAGCTTC 706499
Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729
|| || | |||| ||||| ||||| ||||||||||| | || ||||| ||
Sbjct 706498 TGATACAATAGAAAATGTAAAAGCGAAAATCCAAGACAAAGAAGGAATTCCTCCAGACCA 706439
Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789
|||||||| || ||||| ||||||||| | ||||| | | || | ||||| ||
Sbjct 706438 GCAGCGTTTGATCTTTGCTGGCAAACAATTAGAAGATGGGAGAACCCTTTCAGATTATAA 706379
Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||| || || ||||| ||| ||||||| || || || | |||| |||
Sbjct 706378 CATCCAGAAGGAGTCAACACTACATTTGGTATTGAGACTCAGAGGGGGA 706330
Score = 102 bits (112), Expect = 5e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| |||||||| || ||||| || | || |||||||| |||||| | || ||||| |
Sbjct 721540 AACATGCAGATCTTTGTTAAGACATTAACAGGAAAAACCATCACTTTAGAGGTTGAAGCT 721481
Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727
| ||||| | |||| ||||| ||||| ||||||||||| | || || |||
Sbjct 721480 TCTGACACAATAGAAAATGTAAAAGCTAAAATCCAAGACAAAGAAGGAATCCCACCTGAT 721421
Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787
|| || ||||| || || || |||||||| | ||||| | | | || | |||||
Sbjct 721420 CAGCAACGTTTGATCTTCGCTGGCAAACAGTTAGAAGATGGAAGAACCCTTTCAGATTAT 721361
Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||||| ||||| ||||| || | || || || || || | | ||||||
Sbjct 721360 AACATCCAAAAGGAGTCAACTCTCCACTTGGTATTGAGACTCAGGGGAGGA 721310
Score = 96.9 bits (106), Expect = 2e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Minus
Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669
|||||| || || || || |||||||| || ||||| ||||| | || || || | |
Sbjct 706102 AATGCAAATCTTTGTAAAGACCCTCACAGGGAAAACCATCACCTTGGAGGTAGAAGCTTC 706043
Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728
|| || | || ||| | || |||| | | ||||||||||| | || ||||| |
Sbjct 706042 TGATACAATAGAGAATGTGAAGGCAAAGA-TCCAAGACAAAGAAGGAATCCCTCCAGACC 705984
Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788
| ||||| || || ||||| |||||||| | ||||| | | | ||| | ||||| |
Sbjct 705983 AGCAGCGCTTGATCTTTGCTGGCAAACAGTTAGAAGATGGAAGAACTCTTTCAGATTATA 705924
Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825
|||| || || ||||| ||| ||||||| || || ||
Sbjct 705923 ACATTCAGAAGGAGTCAACACTACATTTGGTATTGAG 705887
Score = 96.9 bits (106), Expect = 2e-15
Identities = 162/232 (70%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667
|| ||||||||||||||||| |||||||| || ||||| ||||| | || || || |
Sbjct 710789 AACATGCAGATTTTCGTTAAGACCCTCACAGGGAAAACTATCACCTTGGAGGTAGAAGCT 710730
Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726
| || || | || ||| | || | ||| || || |||||||| | | || ||
Sbjct 710729 TCTGATACAATAGAGAATGTGAAGGC-AAAGATCCAAGATAAAGAAGGAATTCTCCCTGA 710671
Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786
||| || || || || ||||| || ||||| || ||||| | | | || | |||||
Sbjct 710670 TCAGCAACGATTGATCTTTGCTGGGAAACAGCTAGAAGATGGAAGAACCCTTTCAGATTA 710611
Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838
||||| || || ||||| ||| | ||||| || || || | ||||||||
Sbjct 710610 TAACATTCAGAAGGAGTCAACACTCCATTTGGTATTGAGACTCAGAGGAGGA 710559
>seq1023
Length=1865667
Score = 89.7 bits (98), Expect = 3e-13
Identities = 142/201 (71%), Gaps = 2/201 (1%)
Strand=Plus/Plus
Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885
|||||||||| ||||| || || | || ||| | || || | |||||| || ||
Sbjct 1592295 ACATAATCTTGTCCTTGAACCATTAATAGGTAATAGCACTTAGAAAACCACTTTGCATGT 1592354
Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945
| |||||| || || |||| ||||||||| || || || || | || | | ||||
Sbjct 1592355 TGCTCCCAAGGATCATCTTCAGGTTCCCAATCCTTTAAGCCACCTCCACAATGATAACAT 1592414
Query 32946 ACAACTTTG-TCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTT 33004
| || |||| || || |||| ||||| |||| || || |||||||||||| | |
Sbjct 1592415 A-AAGTTTGATCACCAGTTCCAGTATAATAAAAGCCTGCATCTGCTAATTGTTCCTTTGT 1592473
Query 33005 CTGTTGCAAAGATTTTGGCCA 33025
||| ||| ||||||||||||
Sbjct 1592474 TTGTGGCATAGATTTTGGCCA 1592494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 337236737986388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |