Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Euroglyphus_20maynei_20[genbank_20GCA_5F002135145.1_202017-05-12] 72,749 sequences; 43,437,841 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq42335 123 2e-23 seq10805 113 3e-20 seq4062 93.3 3e-14 seq23110 86.0 4e-12 >seq42335 Length=1439 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| ||||| | ||||| ||| ||| ||| | || |||||| | Sbjct 31 ATGCAAATCTTTGTAAAAACATTGACTGGTAAAACTATAACATTGGAAGTCGAACCGTCG 90 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || || ||| ||||| ||||| |||||| | || || ||| Sbjct 91 GACACTATCGAAAATGTTAAATCCAAAATCCAGGACAAGGAAGGTATCCCTCCAGATCAG 150 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||||| || || ||||||||||| |||||||| || | || | ||||| ||||||||| Sbjct 151 CAACGATTGATCTTTGCCGGAAAGCAATTGGAAGATGGCCGAACATTGTCTGATTACAAC 210 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || ||||| || |||||||| ||||| ||||| | ||||||||| Sbjct 211 ATACAAAAGGAATCAACTTTGCACTTGGTATTGCGACTTCGTGGCGGC 258 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--AGCA 27847 ||||| ||||| |||||||| | || || ||| || || | || || || | || Sbjct 259 ATGCAGATTTTCGTGAAAACATTGACCGGTAAAACCATCACCTTGGAAGTGGAGCCATCA 318 Query 27848 CCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || || | ||| |||||| ||||| || ||||| || ||||| || | Sbjct 319 GATACAATCGAAAAT--GTCAAATCTAAAATCCAAGATAAAGAGGGAATTCCGCCAGACC 376 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||||| || |||||||||||||| |||||||| || | || | ||||||||||||| Sbjct 377 AGCAACGTTTGATTTTTGCCGGAAAGCAATTGGAAGATGGTCGAACTTTGTCCGATTACA 436 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | |||||||| || || ||||||||||| ||||| | ||||| || Sbjct 437 ATATCCAAAAGGAATCGACATTGCATTTGGTATTGCGACTTCGTGGTGG 485 >seq10805 Length=234 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || | ||||| ||| ||||| | || || ||| || | Sbjct 19 ATGCAAATCTTTGTCAAGACCTTGACTGGCAAAACCATTACTTTGGAAGTTGAAC-CATC 77 Query 27850 G---ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || | ||| || ||| ||||| |||||||||||| |||| || Sbjct 78 GGATACCATTGAAAAT--GTAAAAGCTAAAATCCAAGACAAAGAAGGTATTCCACCAGAT 135 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || || || |||||||| ||||||||||| || | || | ||||||||||| Sbjct 136 CAGCAGCGATTGATCTTTGCCGGTAAACAATTGGAAGATGGCCGTACTTTGTCCGATTAT 195 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGT 28005 ||||| |||||||| || ||||||||||| |||||| Sbjct 196 AACATTCAAAAAGAATCAACATTGCATTTGGTATTGCGT 234 >seq4062 Length=326 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || ||||||||||| ||||| ||||| || | || | ||||| || Sbjct 3 GATCAGCAACGTTTGATTTTTGCCGGTAAACAGTTGGAAGATGGTCGTACGTTGTCTGAC 62 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 || || ||||| ||||| |||||||||||||| |||||| | ||||| ||| Sbjct 63 TATAATATCCAGAAAGAATCAACTTTGCATTTGGTATTGCGTCTTCGTGGTGGC 116 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || |||||| | ||||| ||| || ||| | || || || | Sbjct 117 ATGCAAATTTTCGTCAAAACTTTGACTGGTAAAACCATCACATTGGAAGTTGAGCCATCT 176 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| || ||| ||||| || ||||| || |||| || | Sbjct 177 GATACGATCGAGAAT--GTAAAAGCGAAAATCCAGGATAAAGAGGGAATTCCACCAGATC 234 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || || |||||||| || |||||||| || || | || | ||||||||||| | Sbjct 235 AGCAGCGATTGATTTTTGCTGGCAAACAATTAGAAGATGGTCGAACATTGTCCGATTATA 294 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 |||||||||| || || ||||||||||| Sbjct 295 ACATCCAAAAGGAATCGACCTTGCATTTGGT 325 >seq23110 Length=276 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| || |||||||| || ||||| ||||| || | |||| |||||| ||| Sbjct 86 GATCAGCAACGTTTGATTTTTGCTGGTAAACAGTTGGAAGATGGCCGCACCTTGTCGGAT 27 Query 27964 TACAACATCCAAAAAGA 27980 ||||||||||||||||| Sbjct 26 TACAACATCCAAAAAGA 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355546882276323