Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 412 4e-110
>seq4046
Length=337920
Score = 412 bits (456), Expect = 4e-110
Identities = 863/1277 (68%), Gaps = 27/1277 (2%)
Strand=Plus/Minus
Query 53413 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 53472
||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | ||
Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392
Query 53473 ATTTAGATCTTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 53529
|||||| || ||||| | || || ||||| | | | |||||| |||| ||
Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335
Query 53530 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 53588
|| | || |||| ||||||||| || ||||| || | | | || | || | || |
Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276
Query 53589 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTTTCTGACAATTACTTTGA 53648
| || ||||| ||||||| || |||||||| |||||||||||| || |||
Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216
Query 53649 CCACATCCTTCAGTTTGAGAAAATCAAA----TTGTCCATCTATTACAAACATGTTCAAT 53704
|| | |||||| || || ||| | ||||| | | || |||||||| |
Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGT-TCACGAACATGTTGACG 122157
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
||||| || || || || || ||||| ||||||| || | | |||| | || ||
Sbjct 122156 GCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCT 122097
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
||||| ||||| || ||||||||||||| ||| || || || ||| |||||||
Sbjct 122096 GTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAG 122037
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|| ||||| || | ||| | || || || || ||||| |||||||| ||||| || | |
Sbjct 122036 GCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATAC 121977
Query 53885 CAGACGACACGAGCCTTTA-----TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 53939
|||| |||| |||| || ||| || | || || |||| |||
Sbjct 121976 CAGAGCTGCTGAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922
Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999
||||| || ||||||||||||||||| | | | |||||| | | || ||||
Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862
Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059
|||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| |
Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802
Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119
||| || ||||| || | ||| | ||||| || || |||||| || | ||| |
Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742
Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179
|||| | | |||||| |||||| ||||| | ||| || | | ||||||| | |
Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682
Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239
| |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| |
Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622
Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 54297
|| || || ||| ||||| |||| || || ||| ||||| || | |
Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562
Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357
|||| || || ||||| || || || ||||||| ||||| |||| || |||||
Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504
Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417
|| || || || ||| ||| ||| |||| || || ||| || | ||| |
Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444
Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477
||| ||| | || ||||||| ||| ||||||||||| |||||| | | | |||||
Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384
Query 54478 TAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 54537
|||| ||| || || || || ||||| |||||| | || |||||||| || || |
Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324
Query 54538 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTT 54597
||| ||||| ||||| ||||| || || | ||| ||||| || ||||| | ||||
Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264
Query 54598 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACTGA 54657
|| | || ||||| || ||||| | |||| || || || |||||||| || | |
Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204
Query 54658 GTTGAGTTTATCCTTAT 54674
|| || ||||||||
Sbjct 121203 GTCAAGACGATCCTTAT 121187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593670398933520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |