Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq6057 102 7e-17 >seq6057 Length=130802 Score = 102 bits (112), Expect = 7e-17 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | |||||||| || || || ||||| Sbjct 42360 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAG 42301 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | |||| || |||||||||||||||||||||||||||||||||| |||| Sbjct 42300 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGT 42245 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | ||||| || || || |||||||| Sbjct 36588 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAACTGGAG 36529 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | |||| || ||||||||||||||||||||||||| |||||||| |||| Sbjct 36528 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Score = 96.9 bits (106), Expect = 3e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || ||||| | ||| |||||| || ||| | ||||| || || || || ||||| Sbjct 36816 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 36757 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| | |||| || ||||||||||||||||||||||||||||||||||| Sbjct 36756 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 36706 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || |||||||| | ||| |||||| || ||| | ||||| || || || || ||||| Sbjct 37632 GACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 37573 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||| | |||| || |||| |||||||||||||||||||| |||||||| |||| Sbjct 37572 GATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 37517 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || ||| | ||||| || || || || ||||| ||| | |||| || |||| Sbjct 37024 AGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGA 36965 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||||||| |||||||||||||||||||| |||| Sbjct 36964 TTACAATATCCAGAAGGAATCTACTCTTCATCTGGT 36929 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || ||| | ||||| || || || || ||||| ||| | |||| || | || Sbjct 39113 AGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCGGA 39054 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| ||||||||||||||||||||||||||| Sbjct 39053 TTATAATATTCAGAAGGAATCTACTCTTCAC 39023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428299984839845