Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 100 2e-16
>seq6057
Length=130802
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
||||| || | |||||||| |||| ||| | ||| || ||||| ||||| || || ||
Sbjct 36452 TTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCG 36511
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACG 21065
| ||| ||| | |||||||| || || || || | || | ||||||||| || |
Sbjct 36512 GACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 36571
Query 21066 GGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCC 21125
|| | ||||||||||| ||||| || || | ||| |||||| | |||
Sbjct 36572 GGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCG 36631
Query 21126 GTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| ||||| || |||||||| || ||||| || || |||||
Sbjct 36632 ACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| |||||||| || | || | ||| || ||||| ||||| || || || | |
Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| | ||||||||||| || || || | || | ||||||||| || |||
Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||||||||| |||||| || || | | | | |||| | |||
Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| |||||||| ||||| || || ||||| || || |||||
Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| |||||||| |||| ||| | ||| || ||||| ||||| || || || | |
Sbjct 42227 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 42286
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| ||| | ||||||||||| || || ||| | || | ||||||||| || |||
Sbjct 42287 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 42346
Query 21069 ACGCCTTCCTTGTC 21082
| |||||||||||
Sbjct 42347 ATTCCTTCCTTGTC 42360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422223695786684
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |