Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq6057 93.3 3e-14 >seq6057 Length=130802 Score = 93.3 bits (102), Expect = 3e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| || ||| | |||||||| || || || |||| Sbjct 42360 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAG 42301 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | |||| || |||||||||||||||| ||||||||||||||||| |||| Sbjct 42300 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGT 42245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| || ||| | ||||| || || || ||| |||| Sbjct 36588 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAACTGGAG 36529 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | |||| || |||||||||||||||| |||||||| |||||||| |||| Sbjct 36528 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Score = 87.8 bits (96), Expect = 1e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || ||||| | ||| |||||| || ||| | ||||| || || || || |||| Sbjct 36816 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 36757 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||| | |||| || |||||||||||||||| |||||||||||||||||| Sbjct 36756 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 36706 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || |||||||| | ||| |||||| || ||| | ||||| || || || || |||| Sbjct 37632 GACAAAGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 37573 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGT 25243 ||| | |||| || |||| ||||||||||| |||||||| |||||||| |||| Sbjct 37572 GATGGAAGAACTCTGTCCGACTACAATATTCAGAAGGAATCAACTCTTCATCTGGT 37517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410762259563186