Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq891 136 4e-27 seq6057 87.8 2e-12 >seq891 Length=807508 Score = 136 bits (150), Expect = 4e-27 Identities = 224/323 (69%), Gaps = 0/323 (0%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| ||||| || || || ||| || | ||||| || ||||| || | Sbjct 738214 TGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGT 738273 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| || | | | || | |||| ||| | | | || || || | || || | Sbjct 738274 GGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAG 738333 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | ||||||| || || |||||||||||||| || ||| | ||||| || || || |||| Sbjct 738334 GAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATGC 738393 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | || || || ||||| ||||| |||||||||||||||||||| | || ||||| | Sbjct 738394 CTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAGACTTCG 738453 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245 |||| |||||||||| ||| || | | || ||| || ||| | |||||| | Sbjct 738454 CCTGCTTGCTGTTCAGGCACCTGCAGAGGAAGCCCAGCAAGGAGCGTATTCTGGAGATTG 738513 Query 117246 TCACCGACGCGGTCGCCATCGAG 117268 ||| ||||| || |||| ||| Sbjct 738514 TCAAAGACGCTGTTTCCATTGAG 738536 >seq6057 Length=130802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || |||||||||||| | || ||||| || | Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || ||| | | |||| | |||| || |||| ||||| || || || ||| | || || Sbjct 36621 GATAGCATCGAGAACG-TTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 36563 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || || ||||| || | | || || ||| ||||| Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| | || || ||||| || Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515174768784240