Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq891 136 4e-27
seq6057 87.8 2e-12
>seq891
Length=807508
Score = 136 bits (150), Expect = 4e-27
Identities = 224/323 (69%), Gaps = 0/323 (0%)
Strand=Plus/Plus
Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005
|||| ||||| ||||| || || || ||| || | ||||| || ||||| || |
Sbjct 738214 TGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGT 738273
Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065
|||| || | | | || | |||| ||| | | | || || || | || || |
Sbjct 738274 GGATTAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAAG 738333
Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125
| ||||||| || || |||||||||||||| || ||| | ||||| || || || ||||
Sbjct 738334 GAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATGC 738393
Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185
| || || || ||||| ||||| |||||||||||||||||||| | || ||||| |
Sbjct 738394 CTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAGACTTCG 738453
Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCG 117245
|||| |||||||||| ||| || | | || ||| || ||| | |||||| |
Sbjct 738454 CCTGCTTGCTGTTCAGGCACCTGCAGAGGAAGCCCAGCAAGGAGCGTATTCTGGAGATTG 738513
Query 117246 TCACCGACGCGGTCGCCATCGAG 117268
||| ||||| || |||| |||
Sbjct 738514 TCAAAGACGCTGTTTCCATTGAG 738536
>seq6057
Length=130802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || | || || |||||||||||| | || ||||| || |
Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622
Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| ||| | | |||| | |||| || |||| ||||| || || || ||| | || ||
Sbjct 36621 GATAGCATCGAGAACG-TTAAGGCCAAGATTCAGGACAAGGAAGGAATTCCCCCAGATCA 36563
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || || ||||| || | | || || ||| |||||
Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|| |||||||| | || || ||||| ||
Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGT 36473
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515174768784240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |