Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq4668 87.8 2e-12 seq347 82.4 7e-11 >seq4668 Length=1644770 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || || || || ||||||||||||||| | ||| | |||||| Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCC 1192778 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||| ||||||||| |||| | | ||||||||| ||||| || |||||||| || Sbjct 1192779 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834 >seq347 Length=1176111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||||||| | |||||||| || ||||| |||||||| | | || | | | ||| | Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATC--TGAGAGGGTTCTTCCATCTT 1038841 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | |||||||| |||||| |||| | | ||||||||| || || || ||||||||||| Sbjct 1038840 CCAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTC 1038783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433793922862108