Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6057 87.8 2e-12 seq86 87.8 2e-12 >seq6057 Length=130802 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| | |||||| | | || || || ||||| |||||||| Sbjct 36491 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAG 36550 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111 || | || |||||| || | || | | ||||||||| ||| | || | | | || | Sbjct 36551 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TGAATCTTGGCCTTAACGTT 36609 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | | || || | || || || | ||||||||||| || |||| ||||| || Sbjct 36610 CTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGAC 36669 Query 43172 AAAGATTTGCAT 43183 ||||| ||||| Sbjct 36670 GAAGATCTGCAT 36681 Score = 84.2 bits (92), Expect = 3e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| | |||||| | | || || |||||||| |||||||| Sbjct 36719 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAG 36778 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || |||||| || | || | | ||||||||| ||| || || | || Sbjct 36779 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTC 36838 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||| || | || || || | |||||||| || || || | ||||| || Sbjct 36839 TCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACG 36898 Query 43173 AAGATTTGCAT 43183 ||||| ||||| Sbjct 36899 AAGATCTGCAT 36909 >seq86 Length=19873 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| || || || ||||||||||||| || ||||||| Sbjct 5673 TTACTCCCCGTCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATCCTCACCA 5732 Query 60123 CTATACTACCGAGGATTG 60140 ||| |||| ||||||||| Sbjct 5733 CTAGACTAACGAGGATTG 5750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571768287879720