Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 87.8 2e-12
seq86 87.8 2e-12
>seq6057
Length=130802
Score = 87.8 bits (96), Expect = 2e-12
Identities = 136/192 (71%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| |||||||||||||| | |||||| | | || || || ||||| ||||||||
Sbjct 36491 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAG 36550
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-T 43111
|| | || |||||| || | || | | ||||||||| ||| | || | | | || |
Sbjct 36551 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCC-TGAATCTTGGCCTTAACGTT 36609
Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | | || || | || || || | ||||||||||| || |||| ||||| ||
Sbjct 36610 CTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGAC 36669
Query 43172 AAAGATTTGCAT 43183
||||| |||||
Sbjct 36670 GAAGATCTGCAT 36681
Score = 84.2 bits (92), Expect = 3e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052
||||| |||||||||||||| | |||||| | | || || |||||||| ||||||||
Sbjct 36719 TCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAG 36778
Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112
|| | || |||||| || | || | | ||||||||| ||| || || | ||
Sbjct 36779 ATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTC 36838
Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172
| | |||| || | || || || | |||||||| || || || | ||||| ||
Sbjct 36839 TCAATGCTGTCACTAGCCTCGACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACG 36898
Query 43173 AAGATTTGCAT 43183
||||| |||||
Sbjct 36899 AAGATCTGCAT 36909
>seq86
Length=19873
Score = 87.8 bits (96), Expect = 2e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| || || || ||||||||||||| || |||||||
Sbjct 5673 TTACTCCCCGTCCGGGAATCGAACCCGGGCCTTCCACGTGACAGGCGGAGATCCTCACCA 5732
Query 60123 CTATACTACCGAGGATTG 60140
||| |||| |||||||||
Sbjct 5733 CTAGACTAACGAGGATTG 5750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571768287879720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |