Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_002520.1
Length=232392
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 113 7e-20
seq4046 111 2e-19
seq1779 93.3 6e-14
>seq6057
Length=130802
Score = 113 bits (124), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | |||| ||| | ||||||||| || ||||| ||||| ||
Sbjct 36911 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGAC 36970
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| || | || |||||||| || |||||||| |||||||| ||||||
Sbjct 36971 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 37030
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || || ||
Sbjct 37031 ATTCCTTCCTTGTCCTG 37047
Score = 113 bits (124), Expect = 7e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | |||| ||| | ||||||||| || ||||| ||||| ||
Sbjct 42227 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 42286
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| || | || ||||||||||| |||||||| |||||||| || |||
Sbjct 42287 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 42346
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || || ||
Sbjct 42347 ATTCCTTCCTTGTCCTG 42363
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | || | || | ||||||||| || ||||||||||| ||
Sbjct 39000 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGAC 39059
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| || | || |||||||| || |||||||| |||||||| ||||||
Sbjct 39060 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 39119
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || || ||
Sbjct 39120 ATTCCTTCCTTGTCCTG 39136
Score = 104 bits (114), Expect = 3e-17
Identities = 105/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | |||| ||| | ||| ||||| || ||||| || || ||
Sbjct 37499 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGAC 37558
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| || | || |||||||| || |||||||| |||||||| || |||
Sbjct 37559 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 37618
Query 146171 ATTCCTTCTTTATCTTG 146187
||||||||||| || ||
Sbjct 37619 ATTCCTTCTTTGTCCTG 37635
Score = 102 bits (112), Expect = 1e-16
Identities = 106/139 (76%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108
|||| || || || || | |||| ||| | ||| ||||| || ||||| ||||| |
Sbjct 36453 TTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGG 36512
Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168
| |||||||| | ||| || | ||| |||||||| || |||||||| |||||||| || |
Sbjct 36513 ACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 36572
Query 146169 GAATTCCTTCTTTATCTTG 146187
|||||||||| || || ||
Sbjct 36573 GAATTCCTTCCTTGTCCTG 36591
Score = 98.7 bits (108), Expect = 1e-15
Identities = 104/137 (76%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | || | || | ||||||||| || ||||| ||||| ||
Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||| | ||| || | || |||||||| || |||||||| |||||||| || |||
Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802
Query 146171 ATTCCTTCTTTATCTTG 146187
|||||||| || || ||
Sbjct 36803 ATTCCTTCCTTGTCCTG 36819
>seq4046
Length=337920
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110
|| |||||||| || | |||| ||| | ||||||||||| || || ||||| ||
Sbjct 168442 CCTCCTCTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAT 168501
Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170
|||||||||| ||| || | |||||| |||||||| |||||||| |||||||| || ||
Sbjct 168502 AGAGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 168561
Query 146171 ATTCCTTCTTTATC 146184
||||| || |||||
Sbjct 168562 ATTCCCTCCTTATC 168575
>seq1779
Length=2408633
Score = 93.3 bits (102), Expect = 6e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140
|||||||| || ||||||||||| || |||||||| | ||| |||| || || |||
Sbjct 504849 GTAGATTCCTTCTGAATATTATAATCAGATAGAGTTCTTCCATCCTCTAGCTGCTTGCCA 504908
Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATC 146184
|| || |||||||| |||||||| || |||||||| || |||||
Sbjct 504909 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCCTCCTTATC 504952
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 743462280142080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |