Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4046 269 2e-67 seq891 122 8e-23 seq6057 98.7 9e-16 >seq4046 Length=337920 Score = 269 bits (298), Expect = 2e-67 Identities = 884/1369 (65%), Gaps = 23/1369 (2%) Strand=Plus/Minus Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582 || ||||| ||||| |||||||| || ||||| || ||||| || |||| || || ||| Sbjct 122651 TCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAG 122592 Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642 || || | || ||||||| ||| | ||| ||| | | ||| || || || | Sbjct 122591 TTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTG 122532 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 || || || |||||||||| ||||||| | || |||| |||| || Sbjct 122531 GGTGTTACTC---CCCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGA 122475 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 || ||||| || | ||| || | ||||||| || ||||| || |||| || ||||| Sbjct 122474 TAGGTTTCATAAGTACCCAATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAG 122415 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAA---TTCGGCGGCGGC-GACGCTTTCGTACGG 22818 || ||||| || ||||||| ||||| | || || || || |||| | || Sbjct 122414 TAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGA----TTCGAATGG 122359 Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878 | | ||| | | | |||| || |||| ||||||| || ||||| || |||| || Sbjct 122358 GAATCTCATGAGAATGTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTG 122299 Query 22879 TTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934 || || ||||| ||||| | ||||| |||| ||||| || Sbjct 122298 ACGCATGTTG----CTTTTCCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTT 122243 Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA-CG 22993 |||| | ||||||| ||| || | || || ||||| || | Sbjct 122242 TGTTGAGGTTTCTGCAGGCAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCT 122183 Query 22994 CCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053 | || || | ||| |||||||||| || ||||| || ||||| ||||||||||| Sbjct 122182 TGTCAGGGTTCA-CGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCA 122124 Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113 || || | ||| || || ||||| || || ||||| || || || || || | | Sbjct 122123 TCAGGGGCGGAGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGA 122064 Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173 || ||||||| ||||| || || | |||||||| | ||||||||| || || ||| Sbjct 122063 TTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTC 122004 Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTA 23232 || | || || || || || || ||| | |||||| | ||| ||| || | Sbjct 122003 TCAATTTGGGATTCAATAATAGCATACCAGAGCTGCTGAGCTTTTACA-GTCTTCAAGAC 121945 Query 23233 CCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGC 23292 | ||||| | || || || | |||| || || || ||| | || || || Sbjct 121944 GCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATG 121885 Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352 || || || || || |||||||| |||||||| | ||| || || | | Sbjct 121884 AAGTCCAGGGGACTGGTCAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTT 121825 Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412 ||| || ||||| || ||||| | |||||||||||| || | || | ||||||||| Sbjct 121824 CATGAAGAGATCAGGAATCCACATAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTT 121765 Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472 || ||||| ||||||||||| || || || | || ||||||| || || ||||| Sbjct 121764 ACCATGATTCTTCTTCAAATCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTA 121705 Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532 | || || || || ||||||||||| || |||||||| || || | ||| ||||| || Sbjct 121704 GATAGCGAATGCTCCAGGTCTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATT 121645 Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592 ||||||| ||||| || | | ||||| || ||| || || | || Sbjct 121644 AAACACTCTCAGCATAGGAATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGA 121585 Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652 || | || || | |||||| | || || || |||||| | || || || || | Sbjct 121584 CCCATGAGCACGGATACAGTGAACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAG 121525 Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712 ||||| ||||||| || ||||| || || ||||| ||| | | | | Sbjct 121524 AGCGCACTGTTTCAAGGTATCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAG 121465 Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772 ||| || || || | || | ||| |||||||| || || ||||| ||||| Sbjct 121464 GAAGCAGGATGAAAGCTGGGGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTG 121405 Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832 ||||| || | ||| | |||| ||| || || ||||| | ||||| |||||||| Sbjct 121404 AGTAAACAGTCTCTGCGAAAGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCC 121345 Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881 ||| || || | || || | ||||| ||| | || |||||||| ||| Sbjct 121344 GTGGATTCCTACAGCAACTCTCATCAACATCTGCTGGGGTCTCTCCACC 121296 >seq891 Length=807508 Score = 122 bits (134), Expect = 8e-23 Identities = 179/251 (71%), Gaps = 2/251 (1%) Strand=Plus/Plus Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934 || |||||||||||| |||||||| || || || | || |||||||| ||| | | Sbjct 738209 TAAACTGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCT 738268 Query 57935 CAAATGGATAAAAAGCG-CCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993 ||| ||||| || ||| | || || |||||||| || | ||||| || ||| | | Sbjct 738269 CAAGTGGAT-TAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTG 738327 Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053 | ||||| || ||||| || || || || || || || || ||| ||||||| || || | Sbjct 738328 TTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTC 738387 Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113 ||||||| || || || || || ||||| | || || | |||||||| | || || | Sbjct 738388 TGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAG 738447 Query 58114 ATTTTGCGTGC 58124 | || || ||| Sbjct 738448 ACTTCGCCTGC 738458 >seq6057 Length=130802 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| | || || ||||| |||||| | || || || | Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || || |||| |||| | | | ||| | |||||||||||| | || || || || Sbjct 36621 GATAGCATCGAGAACGTTAAGGCCAAGATTCA-GGACAAGGAAGGAATTCCCCCAGATCA 36563 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || |||||||| || || |||| || | ||| || |||||| || Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| |||||||||||||| || || || ||||| || Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGTTCTCAGGCTCAGGGGAGG 36455 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || || |||||| | || || || | Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || |||| | | | ||| | |||||||||||| | || || || || Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGATCA 36791 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | || |||||||| || ||| |||| || | ||| || |||||| || Sbjct 36790 GCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAA 36731 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || ||||| |||||||| || || || || || || || |||| Sbjct 36730 TATTCAGAAGGAATCTACTCTTCACCTTGTTCTCAGGCTTAGAGGAGGTA 36681 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || |||||| | | || |||||||| || ||| |||| Sbjct 37045 GGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGA 36986 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| || |||||| || || || || ||||| |||||||||||||| || Sbjct 36985 GGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGGTTCT 36926 Query 31405 TAGACTGAGGGGCGGTA 31421 || || || || |||| Sbjct 36925 CAGGCTTAGAGGAGGTA 36909 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || || |||||| | | || || ||||| || ||| |||| Sbjct 42361 GGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGA 42302 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || | ||| || |||||| || ||||| || ||||| |||||||||||||| || Sbjct 42301 GGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTTCT 42242 Query 31405 TAGACTGAGGGGCGGTA 31421 || || || || |||| Sbjct 42241 CAGGCTTAGAGGAGGTA 42225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445727958220080