Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 269 2e-67
seq891 122 8e-23
seq6057 98.7 9e-16
>seq4046
Length=337920
Score = 269 bits (298), Expect = 2e-67
Identities = 884/1369 (65%), Gaps = 23/1369 (2%)
Strand=Plus/Minus
Query 22523 TCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAG 22582
|| ||||| ||||| |||||||| || ||||| || ||||| || |||| || || |||
Sbjct 122651 TCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAG 122592
Query 22583 TTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGAC 22642
|| || | || ||||||| ||| | ||| ||| | | ||| || || || |
Sbjct 122591 TTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTG 122532
Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702
|| || || |||||||||| ||||||| | || |||| |||| ||
Sbjct 122531 GGTGTTACTC---CCCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGA 122475
Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762
|| ||||| || | ||| || | ||||||| || ||||| || |||| || |||||
Sbjct 122474 TAGGTTTCATAAGTACCCAATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAG 122415
Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAA---TTCGGCGGCGGC-GACGCTTTCGTACGG 22818
|| ||||| || ||||||| ||||| | || || || || |||| | ||
Sbjct 122414 TAAATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGA----TTCGAATGG 122359
Query 22819 CATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTT 22878
| | ||| | | | |||| || |||| ||||||| || ||||| || |||| ||
Sbjct 122358 GAATCTCATGAGAATGTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTG 122299
Query 22879 TTTCAGATTCGACACTTTT----GCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTC 22934
|| || ||||| ||||| | ||||| |||| ||||| ||
Sbjct 122298 ACGCATGTTG----CTTTTCCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTT 122243
Query 22935 TGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAA-CG 22993
|||| | ||||||| ||| || | || || ||||| || |
Sbjct 122242 TGTTGAGGTTTCTGCAGGCAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCT 122183
Query 22994 CCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCG 23053
| || || | ||| |||||||||| || ||||| || ||||| |||||||||||
Sbjct 122182 TGTCAGGGTTCA-CGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCA 122124
Query 23054 TCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAA 23113
|| || | ||| || || ||||| || || ||||| || || || || || | |
Sbjct 122123 TCAGGGGCGGAGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGA 122064
Query 23114 TTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTC 23173
|| ||||||| ||||| || || | |||||||| | ||||||||| || || |||
Sbjct 122063 TTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTC 122004
Query 23174 TCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCG-CACGTA 23232
|| | || || || || || || ||| | |||||| | ||| ||| || |
Sbjct 122003 TCAATTTGGGATTCAATAATAGCATACCAGAGCTGCTGAGCTTTTACA-GTCTTCAAGAC 121945
Query 23233 CCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGC 23292
| ||||| | || || || | |||| || || || ||| | || || ||
Sbjct 121944 GCGTCCTTCCTTTTCATATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATG 121885
Query 23293 CAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCT 23352
|| || || || || |||||||| |||||||| | ||| || || | |
Sbjct 121884 AAGTCCAGGGGACTGGTCAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTT 121825
Query 23353 CATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTT 23412
||| || ||||| || ||||| | |||||||||||| || | || | |||||||||
Sbjct 121824 CATGAAGAGATCAGGAATCCACATAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTT 121765
Query 23413 GCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTA 23472
|| ||||| ||||||||||| || || || | || ||||||| || || |||||
Sbjct 121764 ACCATGATTCTTCTTCAAATCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTA 121705
Query 23473 AACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTT 23532
| || || || || ||||||||||| || |||||||| || || | ||| ||||| ||
Sbjct 121704 GATAGCGAATGCTCCAGGTCTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATT 121645
Query 23533 GTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA 23592
||||||| ||||| || | | ||||| || ||| || || | ||
Sbjct 121644 AAACACTCTCAGCATAGGAATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGA 121585
Query 23593 ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCAT 23652
|| | || || | |||||| | || || || |||||| | || || || || |
Sbjct 121584 CCCATGAGCACGGATACAGTGAACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAG 121525
Query 23653 CGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAA 23712
||||| ||||||| || ||||| || || ||||| ||| | | | |
Sbjct 121524 AGCGCACTGTTTCAAGGTATCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAG 121465
Query 23713 GAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTG 23772
||| || || || | || | ||| |||||||| || || ||||| |||||
Sbjct 121464 GAAGCAGGATGAAAGCTGGGGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTG 121405
Query 23773 CGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCC 23832
||||| || | ||| | |||| ||| || || ||||| | ||||| ||||||||
Sbjct 121404 AGTAAACAGTCTCTGCGAAAGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCC 121345
Query 23833 GTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACC 23881
||| || || | || || | ||||| ||| | || |||||||| |||
Sbjct 121344 GTGGATTCCTACAGCAACTCTCATCAACATCTGCTGGGGTCTCTCCACC 121296
>seq891
Length=807508
Score = 122 bits (134), Expect = 8e-23
Identities = 179/251 (71%), Gaps = 2/251 (1%)
Strand=Plus/Plus
Query 57875 TAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAAT 57934
|| |||||||||||| |||||||| || || || | || |||||||| ||| | |
Sbjct 738209 TAAACTGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCT 738268
Query 57935 CAAATGGATAAAAAGCG-CCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCG 57993
||| ||||| || ||| | || || |||||||| || | ||||| || ||| | |
Sbjct 738269 CAAGTGGAT-TAACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTG 738327
Query 57994 TCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCC 58053
| ||||| || ||||| || || || || || || || || ||| ||||||| || || |
Sbjct 738328 TTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTC 738387
Query 58054 TGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTG 58113
||||||| || || || || || ||||| | || || | |||||||| | || || |
Sbjct 738388 TGATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAG 738447
Query 58114 ATTTTGCGTGC 58124
| || || |||
Sbjct 738448 ACTTCGCCTGC 738458
>seq6057
Length=130802
Score = 98.7 bits (108), Expect = 9e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| | || || ||||| |||||| | || || || |
Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
|| || |||| |||| | | | ||| | |||||||||||| | || || || ||
Sbjct 36621 GATAGCATCGAGAACGTTAAGGCCAAGATTCA-GGACAAGGAAGGAATTCCCCCAGATCA 36563
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || |||||||| || || |||| || | ||| || |||||| ||
Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||||| || ||||| |||||||||||||| || || || ||||| ||
Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGTTCTCAGGCTCAGGGGAGG 36455
Score = 93.3 bits (102), Expect = 4e-14
Identities = 160/230 (70%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||| || ||||| ||||| |||| || || || |||||| | || || || |
Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850
Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | || |||| | | | ||| | |||||||||||| | || || || ||
Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGATCA 36791
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||| | | || |||||||| || ||| |||| || | ||| || |||||| ||
Sbjct 36790 GCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAA 36731
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421
||||| || ||||| |||||||| || || || || || || || ||||
Sbjct 36730 TATTCAGAAGGAATCTACTCTTCACCTTGTTCTCAGGCTTAGAGGAGGTA 36681
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
|||||||||||| | || || || |||||| | | || |||||||| || ||| ||||
Sbjct 37045 GGACAAGGAAGGAATTCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGA 36986
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| | ||| || |||||| || || || || ||||| |||||||||||||| ||
Sbjct 36985 GGATGGAAGAACTCTGTCCGATTACAATATCCAGAAGGAATCTACTCTTCATCTGGTTCT 36926
Query 31405 TAGACTGAGGGGCGGTA 31421
|| || || || ||||
Sbjct 36925 CAGGCTTAGAGGAGGTA 36909
Score = 86.0 bits (94), Expect = 6e-12
Identities = 101/137 (74%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344
|||||||||||| | || || || |||||| | | || || ||||| || ||| ||||
Sbjct 42361 GGACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGA 42302
Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404
|| | ||| || |||||| || ||||| || ||||| |||||||||||||| ||
Sbjct 42301 GGATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTTCT 42242
Query 31405 TAGACTGAGGGGCGGTA 31421
|| || || || ||||
Sbjct 42241 CAGGCTTAGAGGAGGTA 42225
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445727958220080
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