Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq891 98.7 2e-15 >seq891 Length=807508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 176/254 (69%), Gaps = 5/254 (2%) Strand=Plus/Plus Query 101823 TGTTTAACGCTGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTATTAATT 101882 |||| |||||| || | |||| ||| | ||||| |||| | ||||| | || | Sbjct 738214 TGTTCAACGCTATCGAAACCATCCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAAGT 738273 Query 101883 GGATGCAAAGC-AATAACGAT---TTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAA 101938 |||| || || || |||| | || || ||| |||| | || ||||| | |||||| Sbjct 738274 GGATT-AACGCGAAAAACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGTTGAA 738332 Query 101939 GGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTG 101998 ||||||||||| |||| ||||| ||||||||||| | ||||| | ||| | || Sbjct 738333 GGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCTGATG 738392 Query 101999 CCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTT 102058 ||||| || || | | || || |||| || |||||||| || | || ||||| Sbjct 738393 CCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAGACTTC 738452 Query 102059 GCATGCATGCTGTT 102072 || ||| ||||||| Sbjct 738453 GCCTGCTTGCTGTT 738466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989496527268545