Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4046 401 8e-107 seq891 91.5 2e-13 >seq4046 Length=337920 Score = 401 bits (444), Expect = 8e-107 Identities = 848/1254 (68%), Gaps = 27/1254 (2%) Strand=Plus/Minus Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 ||| || || | ||| || || || | || ||||| ||||| ||||||||||| | || Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392 Query 62711 ATTTAGATCTTGTGCTTCCGGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 |||||| || ||||| | || || ||||| | | | |||||| |||| || Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 62826 || | || |||| ||||||||| || ||||| || | | | || | || | || | Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | || ||||| ||||||| || |||||||| ||||| |||||| || ||| Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62943 || | |||||| || || ||| | | || | || |||||||| | | Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 ||| || || || || || ||||| ||||||| || | | |||| | || || | Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| ||||| || ||||| ||||||| ||| || || || ||| ||||||| | Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | || Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976 Query 63124 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAG 63177 ||| | || |||| |||| || ||| || |||| || |||| ||| Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922 Query 63178 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGAC 63237 ||||| |||||||||||||||||||| | | | || ||| | | || |||| Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862 Query 63238 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63297 |||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| | Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802 Query 63298 GAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63357 ||| || ||||| || | ||| | ||||| || || |||||| || | ||| | Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742 Query 63358 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63417 |||| | | |||||| |||||| ||||| | ||| || || | ||||||| | | Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682 Query 63418 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63477 | |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622 Query 63478 TACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACT 63535 ||||| || ||| ||||| |||| || || ||| ||||| || | | Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562 Query 63536 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63595 |||| || || || || || || || ||||||| ||||| |||| || || || Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504 Query 63596 ATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63655 || || ||||| || ||| | ||| |||| || || ||| || | ||| | Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444 Query 63656 ACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63715 ||| | ||| | || ||||||| ||| ||||||||||| |||||| | | | ||||| Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384 Query 63716 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63775 |||| ||| || ||||| || ||||| |||||| | || |||||||| || || | Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324 Query 63776 CATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTT 63835 ||| ||||| ||||| ||||| || || | || ||||| || |||| | |||| Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264 Query 63836 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 || | || ||||| || ||||| | |||| || || || |||||||| || Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210 >seq891 Length=807508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 173/254 (68%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| ||| || ||||| || ||| | |||||||| || || | ||||||| Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || ||||| ||||| || || ||||| || | ||| || |||| ||||| || Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33752 || |||||||||||||| || | ||||| || |||| ||| || | | ||| | Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287 Query 33753 T---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | | | |||||||| | ||||| || ||||| || || || ||| || ||||| Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCG 738227 Query 33810 ATGGCATTAAAGAG 33823 || || || || || Sbjct 738226 ATAGCGTTGAACAG 738213 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 33236 TTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGAGA---CATAACTCCCATTTT 33292 ||| |||||| |||| | | || | ||||| |||| | |||||| ||||| || Sbjct 740885 TTAGAAGTCAGCATCAAGGGTGAATTTGTTGTCCTCTTTGGTTCCCATAACACCCATCTT 740826 Query 33293 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 33352 || ||||| || ||||| || || || ||||| ||||||||||||| || |||| || Sbjct 740825 CTGATATTCTCCGACACGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATGCTC 740766 Query 33353 CATGAAATCAAACGGATTGGTAACATTGTAAA 33384 |||||| || || |||||| | ||||||| Sbjct 740765 CATGAAGTCGAAAGGATTGCTTGTCTTGTAAA 740734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629763286104720