Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4046 141 9e-29 >seq4046 Length=337920 Score = 141 bits (156), Expect = 9e-29 Identities = 786/1235 (64%), Gaps = 31/1235 (3%) Strand=Plus/Minus Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391 ||||||||||||||| || |||| | ||| | |||||| | ||| || ||||||| Sbjct 122520 CCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGT 122461 Query 37392 TCCGTAAATT--TTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCG 37449 || |||| | || || || || || | ||| || || | || || || ||||| Sbjct 122460 ACCC--AATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCA 122403 Query 37450 AAAATTTGTATATTTAATATTTTTGCTTC-TTCGCTATCGAATGCATAGCCCAATAATAT 37508 || |||||| | |||| | ||| ||||| || | | ||||||| | | || | || Sbjct 122402 AAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAAT 122344 Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568 || ||||||||| ||||||| ||| ||||| || ||||| || | | || | | Sbjct 122343 GTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTT 122284 Query 37569 AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAG 37628 | || | || ||||| ||||| | || || ||||| || || ||| | | | Sbjct 122283 CCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTG-CAGG 122225 Query 37629 TATTTTCGTAATTATTCT-CAACTTGTCGAA--CATAAATAC-GTTATTATTAACAAATT 37684 | | | | |||| || ||| ||||| |||| | || | || || || Sbjct 122224 CAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACA 122165 Query 37685 TACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTA 37744 | | | | ||| || |||| || || || || || ||||| | ||| | Sbjct 122164 TGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGA 122105 Query 37745 TAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTT 37804 || ||||| || ||||| || | || ||||| | ||| || ||||||||| Sbjct 122104 CGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTC 122045 Query 37805 TATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAA 37864 | ||||| | || || || | || ||||| ||||| || ||||| | || |||| Sbjct 122044 TGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAA 121985 Query 37865 TAGATTTCCATAAACTTCTT-GCTTTAACGATCGCTTTAAtttttttCTTTG--TTTCGT 37921 ||| | ||| | || || ||||| || || || || || || |||| | Sbjct 121984 TAGCATACCAGAG-CTGCTGAGCTTTTACAGTC--TTCAAGACGCGTCCTTCCTTTTCAT 121928 Query 37922 ATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGC 37981 ||| ||| | | || || | ||||| || || | ||| || | | | Sbjct 121927 ATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGT 121868 Query 37982 ATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTA 38041 |||||||||||| ||| ||| |||| ||||| | | ||| || | |||||| | Sbjct 121867 CAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAA 121808 Query 38042 CCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT 38100 ||| | || ||| || | ||| | | ||| | || || || || |||||| ||| Sbjct 121807 TCCACATAGC-GTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTT-CTT 121750 Query 38101 --AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTC 38158 || | |||| ||||| ||||| | ||||| ||||| | || || | | ||||| Sbjct 121749 CAAATCCAAGAAC-TCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTC 121691 Query 38159 CTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACA 38218 | ||||| |||| |||||||||| || |||||| ||||||||||| | | ||| | || Sbjct 121690 CAGGTCTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCA 121631 Query 38219 TAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTA 38278 |||| | | || ||||| | ||||| | |||| || || | || | ||| || | Sbjct 121630 TAGGAATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGA 121571 Query 38279 TATTACTTATCGACAAT----CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334 || | | | ||| | || || || || ||| || || |||| |||||| ||| Sbjct 121570 TA-CAGTGA---ACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGT 121515 Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394 || || ||||| | |||||||| ||| || || | || | || || Sbjct 121514 TTCAAGGTATCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGAT 121455 Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454 || | || || ||||| |||||||||||| || ||||| || || | ||| | Sbjct 121454 GAAAGCTGGGGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGT 121395 Query 38455 TTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCT 38514 | | ||| | | || || ||||| || || || ||||| | ||||| || ||| Sbjct 121394 CTCTGCGAAAGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCT 121335 Query 38515 AGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 | || || ||||| | ||| || || ||||| || Sbjct 121334 ACAGCAACTCTCATCAACATCTGCTGGGGTCTCTC 121300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468484395592560