Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 141 9e-29
>seq4046
Length=337920
Score = 141 bits (156), Expect = 9e-29
Identities = 786/1235 (64%), Gaps = 31/1235 (3%)
Strand=Plus/Minus
Query 37332 CCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGG 37391
||||||||||||||| || |||| | ||| | |||||| | ||| || |||||||
Sbjct 122520 CCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGT 122461
Query 37392 TCCGTAAATT--TTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCG 37449
|| |||| | || || || || || | ||| || || | || || || |||||
Sbjct 122460 ACCC--AATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCA 122403
Query 37450 AAAATTTGTATATTTAATATTTTTGCTTC-TTCGCTATCGAATGCATAGCCCAATAATAT 37508
|| |||||| | |||| | ||| ||||| || | | ||||||| | | || | ||
Sbjct 122402 AAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAAT 122344
Query 37509 AAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCT 37568
|| ||||||||| ||||||| ||| ||||| || ||||| || | | || | |
Sbjct 122343 GTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTTGCTTTT 122284
Query 37569 AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTTAACTAG 37628
| || | || ||||| ||||| | || || ||||| || || ||| | | |
Sbjct 122283 CCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTG-CAGG 122225
Query 37629 TATTTTCGTAATTATTCT-CAACTTGTCGAA--CATAAATAC-GTTATTATTAACAAATT 37684
| | | | |||| || ||| ||||| |||| | || | || || ||
Sbjct 122224 CAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACA 122165
Query 37685 TACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTA 37744
| | | | ||| || |||| || || || || || ||||| | ||| |
Sbjct 122164 TGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGA 122105
Query 37745 TAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTT 37804
|| ||||| || ||||| || | || ||||| | ||| || |||||||||
Sbjct 122104 CGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTC 122045
Query 37805 TATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAA 37864
| ||||| | || || || | || ||||| ||||| || ||||| | || ||||
Sbjct 122044 TGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAA 121985
Query 37865 TAGATTTCCATAAACTTCTT-GCTTTAACGATCGCTTTAAtttttttCTTTG--TTTCGT 37921
||| | ||| | || || ||||| || || || || || || |||| |
Sbjct 121984 TAGCATACCAGAG-CTGCTGAGCTTTTACAGTC--TTCAAGACGCGTCCTTCCTTTTCAT 121928
Query 37922 ATTCTATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGC 37981
||| ||| | | || || | ||||| || || | ||| || | | |
Sbjct 121927 ATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGT 121868
Query 37982 ATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTA 38041
|||||||||||| ||| ||| |||| ||||| | | ||| || | |||||| |
Sbjct 121867 CAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAA 121808
Query 38042 CCCATAATGCAGTA-AATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTT 38100
||| | || ||| || | ||| | | ||| | || || || || |||||| |||
Sbjct 121807 TCCACATAGC-GTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTT-CTT 121750
Query 38101 --AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTC 38158
|| | |||| ||||| ||||| | ||||| ||||| | || || | | |||||
Sbjct 121749 CAAATCCAAGAAC-TCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTC 121691
Query 38159 CTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACA 38218
| ||||| |||| |||||||||| || |||||| ||||||||||| | | ||| | ||
Sbjct 121690 CAGGTCTCTTATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCA 121631
Query 38219 TAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTA 38278
|||| | | || ||||| | ||||| | |||| || || | || | ||| || |
Sbjct 121630 TAGGAATCAACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGA 121571
Query 38279 TATTACTTATCGACAAT----CCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGT 38334
|| | | | ||| | || || || || ||| || || |||| |||||| |||
Sbjct 121570 TA-CAGTGA---ACATTGAGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGT 121515
Query 38335 TTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTA 38394
|| || ||||| | |||||||| ||| || || | || | || ||
Sbjct 121514 TTCAAGGTATCGTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGAT 121455
Query 38395 GACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCAT 38454
|| | || || ||||| |||||||||||| || ||||| || || | ||| |
Sbjct 121454 GAAAGCTGGGGACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGT 121395
Query 38455 TTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCT 38514
| | ||| | | || || ||||| || || || ||||| | ||||| || |||
Sbjct 121394 CTCTGCGAAAGAAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCT 121335
Query 38515 AGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
| || || ||||| | ||| || || ||||| ||
Sbjct 121334 ACAGCAACTCTCATCAACATCTGCTGGGGTCTCTC 121300
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468484395592560
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