Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4046 410 2e-109 >seq4046 Length=337920 Score = 410 bits (454), Expect = 2e-109 Identities = 956/1423 (67%), Gaps = 33/1423 (2%) Strand=Plus/Minus Query 65444 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 65503 ||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | || Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392 Query 65504 ATTTAGATCTTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 65560 |||||| || ||||| | || || ||||| | | | |||||| |||| || Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335 Query 65561 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 65619 || | || |||| ||||||||| || ||||| || | | | || | || | || | Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276 Query 65620 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 65679 | || ||||| ||||||| || |||||||| ||||| |||||| || ||| Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216 Query 65680 CCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATG 65736 || | |||||| || || ||| | || || | || |||||||| | | Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156 Query 65737 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 65796 ||| || || || || || ||||| ||||||| || | | |||| | || || | Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096 Query 65797 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 65856 |||| ||||| || ||||||||||||| ||| || || || ||| ||||||| | Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036 Query 65857 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 65916 | ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | || Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976 Query 65917 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 65970 ||| | || |||| |||| || ||| || | || || |||| ||| Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922 Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 ||||| |||||||||||||||||||| | | | |||||| | | || |||| Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862 Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090 |||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| | Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802 Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150 ||| || | ||| || | ||| | ||||| || || |||||| || | ||| | Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742 Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210 |||| | | |||||| |||||| ||||| | ||| || || | ||||||| | | Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682 Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270 | |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622 Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACT 66328 || || || ||| ||||| |||| || || ||| ||||| || | | Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562 Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388 |||| || || || || || || || ||||||| ||||| |||| || ||||| Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504 Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448 || || || || ||| ||| ||| |||| || || ||| || | ||| | Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444 Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508 ||| ||| | || ||||||| ||| ||||||||||| |||||| | | | ||||| Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384 Query 66509 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 66568 |||| ||| || ||||| || ||||| |||||| | || |||||||| || || | Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324 Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628 ||| ||||| ||||| ||||| || || | ||| ||||| || |||| | |||| Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264 Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688 || | || ||||| || ||||| | |||| || || || |||||||| || | | Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204 Query 66689 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATCGGAG 66747 || || |||||||| | | || || | | | || ||| | || || || || | Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-G 121146 Query 66748 AAT-GTTTCCCATTTTTAGGAT-TGACATAGTTGAATAAATCCTCCATCACTTCACTAAA 66805 | | |||| | | ||| || ||| |||| | | |||||| || || |||||||| Sbjct 121145 ATTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAA 121087 Query 66806 TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 66848 || || || ||||| || || ||||| || || |||||| Sbjct 121086 CTTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCTA 121044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658116040823160