Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 410 2e-109
>seq4046
Length=337920
Score = 410 bits (454), Expect = 2e-109
Identities = 956/1423 (67%), Gaps = 33/1423 (2%)
Strand=Plus/Minus
Query 65444 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 65503
||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | ||
Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392
Query 65504 ATTTAGATCTTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 65560
|||||| || ||||| | || || ||||| | | | |||||| |||| ||
Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335
Query 65561 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 65619
|| | || |||| ||||||||| || ||||| || | | | || | || | || |
Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276
Query 65620 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 65679
| || ||||| ||||||| || |||||||| ||||| |||||| || |||
Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216
Query 65680 CCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATG 65736
|| | |||||| || || ||| | || || | || |||||||| | |
Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156
Query 65737 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 65796
||| || || || || || ||||| ||||||| || | | |||| | || || |
Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096
Query 65797 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 65856
|||| ||||| || ||||||||||||| ||| || || || ||| ||||||| |
Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036
Query 65857 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 65916
| ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | ||
Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976
Query 65917 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 65970
||| | || |||| |||| || ||| || | || || |||| |||
Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922
Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030
||||| |||||||||||||||||||| | | | |||||| | | || ||||
Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862
Query 66031 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 66090
|||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| |
Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802
Query 66091 GAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 66150
||| || | ||| || | ||| | ||||| || || |||||| || | ||| |
Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742
Query 66151 GGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 66210
|||| | | |||||| |||||| ||||| | ||| || || | ||||||| | |
Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682
Query 66211 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 66270
| |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| |
Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622
Query 66271 TACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACT 66328
|| || || ||| ||||| |||| || || ||| ||||| || | |
Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562
Query 66329 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 66388
|||| || || || || || || || ||||||| ||||| |||| || |||||
Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504
Query 66389 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 66448
|| || || || ||| ||| ||| |||| || || ||| || | ||| |
Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444
Query 66449 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 66508
||| ||| | || ||||||| ||| ||||||||||| |||||| | | | |||||
Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384
Query 66509 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 66568
|||| ||| || ||||| || ||||| |||||| | || |||||||| || || |
Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324
Query 66569 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 66628
||| ||||| ||||| ||||| || || | ||| ||||| || |||| | ||||
Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264
Query 66629 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 66688
|| | || ||||| || ||||| | |||| || || || |||||||| || | |
Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204
Query 66689 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATCGGAG 66747
|| || |||||||| | | || || | | | || ||| | || || || || |
Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-G 121146
Query 66748 AAT-GTTTCCCATTTTTAGGAT-TGACATAGTTGAATAAATCCTCCATCACTTCACTAAA 66805
| | |||| | | ||| || ||| |||| | | |||||| || || ||||||||
Sbjct 121145 ATTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAA 121087
Query 66806 TAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 66848
|| || || ||||| || || ||||| || || ||||||
Sbjct 121086 CTTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCTA 121044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658116040823160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |