Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4046 87.8 2e-12 >seq4046 Length=337920 Score = 87.8 bits (96), Expect = 2e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 ||||||||||||| || || | |||||| ||||| || || |||||| | |||| | Sbjct 122164 TGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGA 122105 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | |||| ||| |||||| || || ||| || ||| ||| | Sbjct 122104 CGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTC 122045 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 |||||| ||||||||||| | |||||| || || ||||| || ||| ||| |||| Sbjct 122044 TGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAA 121985 Query 153805 TAG 153807 ||| Sbjct 121984 TAG 121982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496021220680800