Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 435 4e-117
seq891 96.9 5e-15
>seq4046
Length=337920
Score = 435 bits (482), Expect = 4e-117
Identities = 1104/1655 (67%), Gaps = 33/1655 (2%)
Strand=Plus/Minus
Query 79090 GTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTT 79149
||||| || |||||||| || | ||||| || || || |||| ||| ||||||||
Sbjct 122684 GTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTG 122625
Query 79150 GATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTT 79207
|| || ||||||||||| |||| | | | || || | ||| ||| | || || |
Sbjct 122624 GAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACC--ATGCTTTGCAATCT 122567
Query 79208 TATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATT 79267
| || || ||||||| || |||| || || ||| | ||||||||
Sbjct 122566 GGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCACATATCATATT 122507
Query 79268 GTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGG 79327
| || |||| | |||| | || || | || |||||||||| || | ||||
Sbjct 122506 GCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGG 122447
Query 79328 CTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA 79387
| | ||||| || || || | |||||||| ||||| ||||| || || | || || |
Sbjct 122446 CAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTA 122387
Query 79388 GATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 79446
|| || ||||| | | | || ||||| | | | |||||| |||| || || |
Sbjct 122386 GAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGG 122328
Query 79447 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA-GCTTCTGGAAT 79505
|| |||| ||||||||| || ||||| || | | | || | || | || || ||
Sbjct 122327 CCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCTCCTTAAC 122269
Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATC 79565
||||| ||||||| || |||||||| ||||| || ||| || ||| || |
Sbjct 122268 GGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTT 122209
Query 79566 CTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATTACAAACATGTTCAACGCGACAGA 79622
||| || || || ||| | || | || | || |||||||| | || | ||
Sbjct 122208 CTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149
Query 79623 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAG 79682
|| || || || ||||| ||||||| || | | |||| | ||||| ||||| ||
Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089
Query 79683 GTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 79742
|| || || |||||||||| ||| || || || ||| ||||||| || |||||
Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029
Query 79743 ATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGA 79801
|| | ||| ||||||| || || ||||| || ||||| ||||| || | ||||| |
Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTG 121969
Query 79802 CTCGAGCCTTTA-----TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 79856
|| |||| |||| || |||| || | || || |||| |||| ||| |
Sbjct 121968 CT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCTCATACAG 121915
Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916
|||||||||||||||||||| || | | |||||| | | |||||||||||| |
Sbjct 121914 AGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAG 121855
Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976
||| ||||||||| ||| ||| | ||||| ||||||||||||||||| | |||
Sbjct 121854 ACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTA 121795
Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036
|| ||||| || | ||| | |||||| || || |||||| || | ||| | |||| |
Sbjct 121794 GAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735
Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096
| |||||| |||||| ||||| | ||| || || | |||| |||| || |||||
Sbjct 121734 GAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCC 121675
Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156
||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | || ||
Sbjct 121674 TCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTT 121615
Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGAT 80214
|| ||| ||||| |||| || || ||| ||||| || | | ||||
Sbjct 121614 AGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTG-- 121557
Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274
|| || || || || || || ||||||| ||||| |||| || ||||| || ||
Sbjct 121556 AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAATA 121497
Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334
|| || || ||| ||| |||| || || ||| || | ||| |||| |
Sbjct 121496 CCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGGGA 121437
Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394
|| | || ||||||| ||| ||||||||||| |||||| | | | || || |||| |
Sbjct 121436 GTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGATCG 121377
Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454
|| || ||||| || || || |||||| | || |||||||| || || | ||| |||
Sbjct 121376 TAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCTCATCAAC 121317
Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514
|| ||||| ||||| || || | ||| || || || |||| | ||| || |
Sbjct 121316 ATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTAGG 121257
Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574
|| ||||| || ||||| | |||| || || || |||||||| || | | || ||
Sbjct 121256 GTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGCGTCAAGA 121197
Query 80575 TTATCCTTATATTTGTTAACTACATCCATGGTGATACT-TGAAATAATCGGAGAAT-GTT 80632
|||||||| | | || || | | | |||||| | || || || || || | |||
Sbjct 121196 CGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-GATTGGTT 121139
Query 80633 TCCCATTTTTAGGAT-TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 80691
| | | ||| || ||| |||| | | |||||| || || |||||||| ||
Sbjct 121138 TAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAACTTCTTC 121080
Query 80692 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 80726
|| || || || || || ||||| || || |||||
Sbjct 121079 TTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCT 121045
>seq891
Length=807508
Score = 96.9 bits (106), Expect = 5e-15
Identities = 174/254 (69%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010
|||| ||| || ||||| || ||| | |||||||| || || ||||||||
Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407
Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070
|| || ||||| ||||| || || ||||| || | ||| || |||| || || |||
Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347
Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130
|| |||||||||||||| || | |||||| || | || ||| || | | | ||| |
Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287
Query 50131 T---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187
| | | |||||||| | ||||| || ||||| || || || ||| || |||||
Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCG 738227
Query 50188 ATGGCATTAAAGAG 50201
|| || || || ||
Sbjct 738226 ATAGCGTTGAACAG 738213
Score = 87.8 bits (96), Expect = 3e-12
Identities = 103/139 (74%), Gaps = 3/139 (2%)
Strand=Plus/Minus
Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGA---CATAACTCCCATTTT 49670
||| |||||| |||| || | || | || || |||| | |||||| ||||| ||
Sbjct 740885 TTAGAAGTCAGCATCAAGGGTGAATTTGTTGTCCTCTTTGGTTCCCATAACACCCATCTT 740826
Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730
|| ||||| || ||||| || || || ||||| ||||||||||||| || |||| ||
Sbjct 740825 CTGATATTCTCCGACACGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATGCTC 740766
Query 49731 CATGAAATCAAACGGATTG 49749
|||||| || || ||||||
Sbjct 740765 CATGAAGTCGAAAGGATTG 740747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718206858294360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |