Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq4046 435 4e-117 seq891 96.9 5e-15 >seq4046 Length=337920 Score = 435 bits (482), Expect = 4e-117 Identities = 1104/1655 (67%), Gaps = 33/1655 (2%) Strand=Plus/Minus Query 79090 GTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTT 79149 ||||| || |||||||| || | ||||| || || || |||| ||| |||||||| Sbjct 122684 GTGTAGATGTTACTGGTGTAGGCCTCCACGCTCTCGTTGTTGCCCAGAATCTGAGCAGTG 122625 Query 79150 GATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTG--ATTT 79207 || || ||||||||||| |||| | | | || || | ||| ||| | || || | Sbjct 122624 GAAGCTGTTGGCATAGGAGCCAGGAGCAGAGAGTTCCTTACACC--ATGCTTTGCAATCT 122567 Query 79208 TATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATT 79267 | || || ||||||| || |||| || || ||| | |||||||| Sbjct 122566 GGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGTGGGTGTTACTCCCCACATATCATATT 122507 Query 79268 GTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGG 79327 | || |||| | |||| | || || | || |||||||||| || | |||| Sbjct 122506 GCAGCCTACCCTGACTAACCGGAGAACCAGGATAGGTTTCATAAGTACCCAATTGCTCGG 122447 Query 79328 CTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA 79387 | | ||||| || || || | |||||||| ||||| ||||| || || | || || | Sbjct 122446 CAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTGTTTA 122387 Query 79388 GATCTTGTGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 79446 || || ||||| | | | || ||||| | | | |||||| |||| || || | Sbjct 122386 GAAGTTTAGCTTCGTTAGAT-TCGAATGGGAATCTCATGAGAATGTACGCATCAGCCAGG 122328 Query 79447 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCA-GCTTCTGGAAT 79505 || |||| ||||||||| || ||||| || | | | || | || | || || || Sbjct 122327 CCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCTCCTTAAC 122269 Query 79506 AGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACATC 79565 ||||| ||||||| || |||||||| ||||| || ||| || ||| || | Sbjct 122268 GGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGATACCTT 122209 Query 79566 CTTTAGTTTGAGAAAATCAAA--TCGTC-CATCTATTACAAACATGTTCAACGCGACAGA 79622 ||| || || || ||| | || | || | || |||||||| | || | || Sbjct 122208 CTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGCAATGGA 122149 Query 79623 TGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAG 79682 || || || || ||||| ||||||| || | | |||| | ||||| ||||| || Sbjct 122148 GGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGTGCACAG 122089 Query 79683 GTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTT 79742 || || || |||||||||| ||| || || || ||| ||||||| || ||||| Sbjct 122088 ATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGCGTCCTT 122029 Query 79743 ATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGA 79801 || | ||| ||||||| || || ||||| || ||||| ||||| || | ||||| | Sbjct 122028 GTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCAGAGCTG 121969 Query 79802 CTCGAGCCTTTA-----TTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAA 79856 || |||| |||| || |||| || | || || |||| |||| ||| | Sbjct 121968 CT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCTCATACAG 121915 Query 79857 TCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAA 79916 |||||||||||||||||||| || | | |||||| | | |||||||||||| | Sbjct 121914 AGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATTAG 121855 Query 79917 CGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 ||| ||||||||| ||| ||| | ||||| ||||||||||||||||| | ||| Sbjct 121854 ACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCGTA 121795 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 || ||||| || | ||| | |||||| || || |||||| || | ||| | |||| | Sbjct 121794 GAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAACTC 121735 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | |||||| |||||| ||||| | ||| || || | |||| |||| || ||||| Sbjct 121734 GAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTTCC 121675 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 ||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | || || Sbjct 121674 TCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCGTT 121615 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGAT 80214 || ||| ||||| |||| || || ||| ||||| || | | |||| Sbjct 121614 AGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTG-- 121557 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 || || || || || || || ||||||| ||||| |||| || ||||| || || Sbjct 121556 AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAATA 121497 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 || || || ||| ||| |||| || || ||| || | ||| |||| | Sbjct 121496 CCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGGGA 121437 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || | || ||||||| ||| ||||||||||| |||||| | | | || || |||| | Sbjct 121436 GTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGATCG 121377 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || || ||||| || || || |||||| | || |||||||| || || | ||| ||| Sbjct 121376 TAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCTCATCAAC 121317 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || ||||| ||||| || || | ||| || || || |||| | ||| || | Sbjct 121316 ATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTAGG 121257 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 || ||||| || ||||| | |||| || || || |||||||| || | | || || Sbjct 121256 GTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGCGTCAAGA 121197 Query 80575 TTATCCTTATATTTGTTAACTACATCCATGGTGATACT-TGAAATAATCGGAGAAT-GTT 80632 |||||||| | | || || | | | |||||| | || || || || || | ||| Sbjct 121196 CGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-GATTGGTT 121139 Query 80633 TCCCATTTTTAGGAT-TAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 80691 | | | ||| || ||| |||| | | |||||| || || |||||||| || Sbjct 121138 TAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAACTTCTTC 121080 Query 80692 tttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 80726 || || || || || || ||||| || || ||||| Sbjct 121079 TTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCT 121045 >seq891 Length=807508 Score = 96.9 bits (106), Expect = 5e-15 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| ||| || ||||| || ||| | |||||||| || || |||||||| Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || ||||| ||||| || || ||||| || | ||| || |||| || || ||| Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || |||||||||||||| || | |||||| || | || ||| || | | | ||| | Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287 Query 50131 T---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | | | |||||||| | ||||| || ||||| || || || ||| || ||||| Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCG 738227 Query 50188 ATGGCATTAAAGAG 50201 || || || || || Sbjct 738226 ATAGCGTTGAACAG 738213 Score = 87.8 bits (96), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 49614 TTAAAAGTCAACATCTAGAGAAAAATGATTATCTTCTTGAGA---CATAACTCCCATTTT 49670 ||| |||||| |||| || | || | || || |||| | |||||| ||||| || Sbjct 740885 TTAGAAGTCAGCATCAAGGGTGAATTTGTTGTCCTCTTTGGTTCCCATAACACCCATCTT 740826 Query 49671 TTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTC 49730 || ||||| || ||||| || || || ||||| ||||||||||||| || |||| || Sbjct 740825 CTGATATTCTCCGACACGCTTCTCAAAGAAATTTGTTTTTCCTTCCAGAGAAATATGCTC 740766 Query 49731 CATGAAATCAAACGGATTG 49749 |||||| || || |||||| Sbjct 740765 CATGAAGTCGAAAGGATTG 740747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718206858294360