Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 399 3e-106
>seq4046
Length=337920
Score = 399 bits (442), Expect = 3e-106
Identities = 845/1249 (68%), Gaps = 19/1249 (2%)
Strand=Plus/Minus
Query 71407 TCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTA 71466
||||| || ||||| || || || | ||||| || ||||| ||||| || || | ||
Sbjct 122450 TCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTG 122391
Query 71467 TTGAGATCTTGTGCTTCCGGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCT 71523
|| ||| || ||||| | || || ||||| | | | |||||| |||| ||
Sbjct 122390 TTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATCA 122334
Query 71524 GCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA-GCTTC 71582
|| | || |||| |||||||| || |||||||| | | | || | || | || ||
Sbjct 122333 GCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCTC 122275
Query 71583 TGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGAC 71642
|| ||||| ||||||| || |||||||| ||||| |||||| || |||
Sbjct 122274 CTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGA 122215
Query 71643 CACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGC 71699
|| | ||| || || || ||| | || || | || |||| ||| | |||
Sbjct 122214 TACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGC 122155
Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGT 71759
|| || || || || || ||||| ||||||| || ||| |||| | ||||| ||
Sbjct 122154 AATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGT 122095
Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819
||| ||||| || ||||||||||||| ||| || || || ||| ||||||| ||
Sbjct 122094 GCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGC 122035
Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879
||||| || | || ||||||| || || ||||| || ||||| ||||| || | |||
Sbjct 122034 GTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCA 121975
Query 71880 GA-CGACTCGAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTATTGTGTATAT 71937
|| | || |||| |||| | ||| | | || || || |||| |||| |||
Sbjct 121974 GAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGTCCTTCCT-TTTCATATTTCTCATAC 121917
Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATC 71997
| |||||||||||||||||| | | | | |||||| | | | ||||||||
Sbjct 121916 AGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATT 121857
Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057
| ||| ||||||||| | | ||| | ||||| ||||||||||||||||| | |||
Sbjct 121856 AGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCG 121797
Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117
|| ||||| || | ||| | |||||| || || |||||| || | ||| | ||||
Sbjct 121796 TAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAAC 121737
Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177
| | |||||| |||||| ||||| | ||| || || | |||| || | || |||
Sbjct 121736 TCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTT 121677
Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237
||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | ||
Sbjct 121676 CCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCG 121617
Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTG 72295
|| || ||| ||||| |||| || || ||| ||||| || | || ||||
Sbjct 121616 TTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTG 121557
Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355
|| || || || || || || ||||||| ||||| |||| || ||||| || |
Sbjct 121556 --AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAA 121499
Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415
| || || ||| ||| ||| |||| || || ||| || | ||| ||||
Sbjct 121498 TACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGG 121439
Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475
||| | || ||||||| ||| ||||||||||| |||||| | | | || || ||||
Sbjct 121438 GAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGAT 121379
Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535
||| || ||||| || || || |||||| | || |||||||| || || | ||| |
Sbjct 121378 CGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCTCATCA 121319
Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595
|||| ||||| ||||| || || | ||| || || || |||| | |||| || |
Sbjct 121318 ACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTA 121259
Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644
|| ||||| || ||||| | |||| || || || |||||||| ||
Sbjct 121258 GGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671081322633240
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