Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4046 399 3e-106 >seq4046 Length=337920 Score = 399 bits (442), Expect = 3e-106 Identities = 845/1249 (68%), Gaps = 19/1249 (2%) Strand=Plus/Minus Query 71407 TCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTA 71466 ||||| || ||||| || || || | ||||| || ||||| ||||| || || | || Sbjct 122450 TCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTTG 122391 Query 71467 TTGAGATCTTGTGCTTCCGGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTCT 71523 || ||| || ||||| | || || ||||| | | | |||||| |||| || Sbjct 122390 TTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATCA 122334 Query 71524 GCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCA-GCTTC 71582 || | || |||| |||||||| || |||||||| | | | || | || | || || Sbjct 122333 GCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCTC 122275 Query 71583 TGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGAC 71642 || ||||| ||||||| || |||||||| ||||| |||||| || ||| Sbjct 122274 CTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGGA 122215 Query 71643 CACATCCTTTAGTTTGAGAAAATCAAATCTCCCATCTA---TTACAAACACGTTCAAGGC 71699 || | ||| || || || ||| | || || | || |||| ||| | ||| Sbjct 122214 TACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGGC 122155 Query 71700 AACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGT 71759 || || || || || || ||||| ||||||| || ||| |||| | ||||| || Sbjct 122154 AATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTGT 122095 Query 71760 GCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 71819 ||| ||||| || ||||||||||||| ||| || || || ||| ||||||| || Sbjct 122094 GCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGGC 122035 Query 71820 ATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 71879 ||||| || | || ||||||| || || ||||| || ||||| ||||| || | ||| Sbjct 122034 GTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACCA 121975 Query 71880 GA-CGACTCGAGCCTTTATTATATTCTTGTATC-TCTTTTCTCTTTCGTATTGTGTATAT 71937 || | || |||| |||| | ||| | | || || || |||| |||| ||| Sbjct 121974 GAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGTCCTTCCT-TTTCATATTTCTCATAC 121917 Query 71938 AATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATC 71997 | |||||||||||||||||| | | | | |||||| | | | |||||||| Sbjct 121916 AGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGACACATT 121857 Query 71998 AATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 | ||| ||||||||| | | ||| | ||||| ||||||||||||||||| | ||| Sbjct 121856 AGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACATAGCG 121797 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 || ||||| || | ||| | |||||| || || |||||| || | ||| | |||| Sbjct 121796 TAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCAAGAAC 121737 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | |||||| |||||| ||||| | ||| || || | |||| || | || ||| Sbjct 121736 TCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCTTATTT 121677 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | || Sbjct 121676 CCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCAACCCG 121617 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTG 72295 || || ||| ||||| |||| || || ||| ||||| || | || |||| Sbjct 121616 TTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAACATTG 121557 Query 72296 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 72355 || || || || || || || ||||||| ||||| |||| || ||||| || | Sbjct 121556 --AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATCGTAAA 121499 Query 72356 TGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 72415 | || || ||| ||| ||| |||| || || ||| || | ||| |||| Sbjct 121498 TACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGGACGGG 121439 Query 72416 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 72475 ||| | || ||||||| ||| ||||||||||| |||||| | | | || || |||| Sbjct 121438 GAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAGAAGAT 121379 Query 72476 TGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || ||||| || || || |||||| | || |||||||| || || | ||| | Sbjct 121378 CGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCTCATCA 121319 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| ||||| ||||| || || | ||| || || || |||| | |||| || | Sbjct 121318 ACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACGCTCTA 121259 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 || ||||| || ||||| | |||| || || || |||||||| || Sbjct 121258 GGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGAT 121210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671081322633240