Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq347 93.3 4e-14
seq6057 91.5 1e-13
>seq347
Length=1176111
Score = 93.3 bits (102), Expect = 4e-14
Identities = 90/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892
|||| |||||| ||||||||||| |||||||||||||| | | ||| | | || |||
Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATCTGAGAGGGTTCTTCCATCTTCC 1038839
Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948
||||||||||| || | || | |||||||||||| ||| | ||||| |||||
Sbjct 1038838 AGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTC 1038783
>seq6057
Length=130802
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 18812 TTTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCC 18871
|||||||| | | ||| | |||| || | || || ||||| ||||||||||||||
Sbjct 36452 TTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCG 36511
Query 18872 GCCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACG 18931
| || ||| | | |||||||| || || || || | || | |||||||||||| |
Sbjct 36512 GACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 36571
Query 18932 GGCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCC 18991
|| | || || ||||| ||| || || || | ||| |||| | || |||
Sbjct 36572 GGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCG 36631
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|| | ||| ||||||||||| ||||| || ||||| || || |||||
Sbjct 36632 ACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414537942071206
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |