Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 161 2e-34
seq4046 129 1e-24
seq891 116 9e-21
seq1779 113 1e-19
seq4668 93.3 1e-13
>seq6057
Length=130802
Score = 161 bits (178), Expect = 2e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390
|||| || || ||||| || || ||||| | || ||||| ||||||||||| || || |
Sbjct 36453 TTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGG 36512
Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450
| |||||||| || || || ||||| |||||||| || || | ||||| ||||| || |
Sbjct 36513 ACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 36572
Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510
| |||||||| || ||||||||||| || || || || || | | |||| |||| || |
Sbjct 36573 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGA 36632
Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
|||| || || || || ||||| || | || || || || ||||||||
Sbjct 36633 CCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 149 bits (164), Expect = 1e-30
Identities = 171/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| ||||| || || || || | |||||||| ||||||||||| || ||
Sbjct 36680 ATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCG 36739
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || || || |||||||| || || | ||||| ||||| ||
Sbjct 36740 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 36799
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || ||||| ||||| || || || || || | | | || |||| ||
Sbjct 36800 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCG 36859
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || ||||| || || | || || || || ||||||||
Sbjct 36860 ACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| ||||| || || ||||| | || ||||| ||||||||||| |||||
Sbjct 37496 ATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCG 37555
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || || || |||||||| || || | ||||| ||||| ||
Sbjct 37556 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 37615
Query 104450 GGTATTCCTTCTTTATCCTGAA 104471
|| ||||||||||| |||||||
Sbjct 37616 GGAATTCCTTCTTTGTCCTGAA 37637
Score = 122 bits (134), Expect = 2e-22
Identities = 112/142 (79%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| ||||| || || || || | |||||||| |||||||||||||| ||
Sbjct 38997 ATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCC 39056
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || || || |||||||| || || | ||||| ||||| |||
Sbjct 39057 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGA 39116
Query 104450 GGTATTCCTTCTTTATCCTGAA 104471
|| |||||||| || |||||||
Sbjct 39117 GGAATTCCTTCCTTGTCCTGAA 39138
Score = 118 bits (130), Expect = 2e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||| ||||| || || ||||| | |||||||| ||||||||||| || ||
Sbjct 42224 ATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCG 42283
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| |||||||| || || || || || ||||||||||| || | ||||| ||||| ||
Sbjct 42284 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 42343
Query 104450 GGTATTCCTTCTTTATCCTG 104469
|| |||||||| || |||||
Sbjct 42344 GGAATTCCTTCCTTGTCCTG 42363
>seq4046
Length=337920
Score = 129 bits (142), Expect = 1e-24
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| ||||| || || ||||| | |||||||||||||| || || || ||||||
Sbjct 168442 CCTCCTCTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAT 168501
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
|||||||| || ||||| |||||||| |||||||| || | ||||| ||||| || ||
Sbjct 168502 AGAGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 168561
Query 104453 ATTCCTTCTTTATCCT 104468
||||| || |||||||
Sbjct 168562 ATTCCCTCCTTATCCT 168577
>seq891
Length=807508
Score = 116 bits (128), Expect = 9e-21
Identities = 157/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 269072 GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG---ATAGCGCGCCTTACGGA 269128
|||| ||||| | || ||||| || || ||||| |||| | | ||| | | ||
Sbjct 738243 GTGAAGAAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGCTACATTCGCC 738302
Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188
||||| | | ||||||||| |||| ||||| || ||||| || || ||| |||||
Sbjct 738303 GAAAGAATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCC 738362
Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248
|| || ||||||||||| |||| || ||||| ||| | || ||| ||||||| | ||
Sbjct 738363 ATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATC 738422
Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
||||||||| || |||||| |||||||| || ||
Sbjct 738423 TCCAGGGACGAGGGATTACACACAGACTTCGCCTGCTT 738460
>seq1779
Length=2408633
Score = 113 bits (124), Expect = 1e-19
Identities = 103/130 (79%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 104339 CTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT 104398
|| ||||| || || || || | |||||||| |||||||||||||| ||||||||||||
Sbjct 504825 CTCAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTT 504884
Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458
|| || || ||||| || || ||||| || || | ||||| ||||| || || |||||
Sbjct 504885 CTTCCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCC 504944
Query 104459 TCTTTATCCT 104468
|| |||||||
Sbjct 504945 TCCTTATCCT 504954
>seq4668
Length=1644770
Score = 93.3 bits (102), Expect = 1e-13
Identities = 86/109 (79%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| |||||||| || || || ||||||||||| || || || || || ||||||
Sbjct 1192731 GTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTGCTTTCCA 1192790
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471
|| || || | ||||| ||||| ||||| ||||| || ||||||| ||
Sbjct 1192791 GCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCCTTAA 1192839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151296623937492
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |