Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6057 161 2e-34 seq4046 129 1e-24 seq891 116 9e-21 seq1779 113 1e-19 seq4668 93.3 1e-13 >seq6057 Length=130802 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || ||||| | || ||||| ||||||||||| || || | Sbjct 36453 TTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGG 36512 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 | |||||||| || || || ||||| |||||||| || || | ||||| ||||| || | Sbjct 36513 ACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGG 36572 Query 104451 GTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTA 104510 | |||||||| || ||||||||||| || || || || || | | |||| |||| || | Sbjct 36573 GAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGA 36632 Query 104511 CCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || ||||| || | || || || || |||||||| Sbjct 36633 CCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || || || | |||||||| ||||||||||| || || Sbjct 36680 ATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCG 36739 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || || || |||||||| || || | ||||| ||||| || Sbjct 36740 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 36799 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| || || || || || | | | || |||| || Sbjct 36800 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCG 36859 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || | || || || || |||||||| Sbjct 36860 ACCTCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || ||||| | || ||||| ||||||||||| ||||| Sbjct 37496 ATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCG 37555 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || || || |||||||| || || | ||||| ||||| || Sbjct 37556 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGG 37615 Query 104450 GGTATTCCTTCTTTATCCTGAA 104471 || ||||||||||| ||||||| Sbjct 37616 GGAATTCCTTCTTTGTCCTGAA 37637 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || || || | |||||||| |||||||||||||| || Sbjct 38997 ATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCC 39056 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || || || |||||||| || || | ||||| ||||| ||| Sbjct 39057 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGA 39116 Query 104450 GGTATTCCTTCTTTATCCTGAA 104471 || |||||||| || ||||||| Sbjct 39117 GGAATTCCTTCCTTGTCCTGAA 39138 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || ||||| | |||||||| ||||||||||| || || Sbjct 42224 ATACCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCG 42283 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || |||||||| || || || || || ||||||||||| || | ||||| ||||| || Sbjct 42284 GACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGG 42343 Query 104450 GGTATTCCTTCTTTATCCTG 104469 || |||||||| || ||||| Sbjct 42344 GGAATTCCTTCCTTGTCCTG 42363 >seq4046 Length=337920 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| ||||| || || ||||| | |||||||||||||| || || || |||||| Sbjct 168442 CCTCCTCTAAGCCTGAGAACCAGATGAAGGGTAGATTCTTTCTGGATGTTGTAATCAGAT 168501 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 |||||||| || ||||| |||||||| |||||||| || | ||||| ||||| || || Sbjct 168502 AGAGTTCTGCCATCTTCAAGTTGTTTCCCAGCAAAGATCAATCTCTGCTGATCTGGGGGG 168561 Query 104453 ATTCCTTCTTTATCCT 104468 ||||| || ||||||| Sbjct 168562 ATTCCCTCCTTATCCT 168577 >seq891 Length=807508 Score = 116 bits (128), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 269072 GTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACG---ATAGCGCGCCTTACGGA 269128 |||| ||||| | || ||||| || || ||||| |||| | | ||| | | || Sbjct 738243 GTGAAGAAAAAGGCAGACTGGGCCCTCAAGTGGATTAACGCGAAAAACGCTACATTCGCC 738302 Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 ||||| | | ||||||||| |||| ||||| || ||||| || || ||| ||||| Sbjct 738303 GAAAGAATTATCGCTTTTGCCTCTGTTGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCC 738362 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 || || ||||||||||| |||| || ||||| ||| | || ||| ||||||| | || Sbjct 738363 ATTTTCTGGTTGAAGAAGCGAGGTCTGATGCCTGGACTTACATTCAGTAACGAACTCATC 738422 Query 269249 AGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 ||||||||| || |||||| |||||||| || || Sbjct 738423 TCCAGGGACGAGGGATTACACACAGACTTCGCCTGCTT 738460 >seq1779 Length=2408633 Score = 113 bits (124), Expect = 1e-19 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 104339 CTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTT 104398 || ||||| || || || || | |||||||| |||||||||||||| |||||||||||| Sbjct 504825 CTCAGCCTGAGAACAAGGTGAAGGGTAGATTCCTTCTGAATATTATAATCAGATAGAGTT 504884 Query 104399 CTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCT 104458 || || || ||||| || || ||||| || || | ||||| ||||| || || ||||| Sbjct 504885 CTTCCATCCTCTAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCC 504944 Query 104459 TCTTTATCCT 104468 || ||||||| Sbjct 504945 TCCTTATCCT 504954 >seq4668 Length=1644770 Score = 93.3 bits (102), Expect = 1e-13 Identities = 86/109 (79%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || ||||||||||| || || || || || |||||| Sbjct 1192731 GTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCCAGCTGCTTTCCA 1192790 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAA 104471 || || || | ||||| ||||| ||||| ||||| || ||||||| || Sbjct 1192791 GCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATCCTTAA 1192839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151296623937492