Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq6057 116 3e-21
seq4668 84.2 2e-11
seq347 82.4 7e-11
>seq6057
Length=130802
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | | | || | ||| | |||||||||||| || | || |||||| |
Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| ||||| | ||||| ||||| ||||||||||| |||
Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| ||||| ||||| | || || ||||| ||| | | ||||| |||||
Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| ||||| || | || || || |||||||||||
Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909
Score = 111 bits (122), Expect = 1e-19
Identities = 150/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| || | ||| |||||||| || | || |||||| || ||| | |||||||
Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
|| || ||||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| | |
Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| ||| ||| | ||| ||||| || | |||||||||||
Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || | || || || |||||||||||
Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | | | |||| || | |||||||||||| || | || |||||| |
Sbjct 36911 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGAC 36970
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| ||||| | ||||| ||||| |||||||||||||||
Sbjct 36971 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 37030
Query 94901 ATACCTTCTTTGTC 94914
|| ||||| |||||
Sbjct 37031 ATTCCTTCCTTGTC 37044
Score = 98.7 bits (108), Expect = 9e-16
Identities = 107/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832
||| || |||||||| | | | || | ||| | |||||||||||| || | ||||
Sbjct 38992 TTTGCATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTAT 39051
Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892
|||| || ||| | |||||||||||| ||||| | ||||| ||||| |||||||
Sbjct 39052 AATCCGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGAT 39111
Query 94893 CTGGAGGAATACCTTCTTTGTC 94914
|||||||||| ||||| |||||
Sbjct 39112 CTGGAGGAATTCCTTCCTTGTC 39133
Score = 98.7 bits (108), Expect = 9e-16
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | | | |||| || | |||||||||||| || | || |||||| |
Sbjct 42227 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 42286
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| ||||| ||||||| ||||| ||||||||||| |||
Sbjct 42287 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 42346
Query 94901 ATACCTTCTTTGTC 94914
|| ||||| |||||
Sbjct 42347 ATTCCTTCCTTGTC 42360
Score = 89.7 bits (98), Expect = 5e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|||||||| | | | |||| || | ||| |||||||| || | || || ||| |
Sbjct 37499 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGAC 37558
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | |||||||||||| ||||| | ||||| ||||| ||||||||||| |||
Sbjct 37559 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 37618
Query 94901 ATACCTTCTTTGTC 94914
|| |||||||||||
Sbjct 37619 ATTCCTTCTTTGTC 37632
>seq4668
Length=1644770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||||||| | || |||||||| || | ||| |||||| | ||| | |||||||
Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCC 1192778
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914
||||| ||||| | ||||| ||||| |||||||||||||| || || || || ||
Sbjct 1192779 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834
>seq347
Length=1176111
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/118 (76%), Gaps = 4/118 (3%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856
||||||||||| ||||| ||||| || | || ||||| | | || ||| ||| |
Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATC--TGAGAGGGTTCTTCCATCTT 1038841
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914
|||||||||| || | ||||| ||||| ||||||||||| ||||| || || |||||
Sbjct 1038840 CCAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTC 1038783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448252540487640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |