Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6057 116 3e-21 seq4668 84.2 2e-11 seq347 82.4 7e-11 >seq6057 Length=130802 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | | | || | ||| | |||||||||||| || | || |||||| | Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| ||||| | ||||| ||||| ||||||||||| ||| Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| ||| | | ||||| ||||| Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| ||||| || | || || || ||||||||||| Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | ||| |||||||| || | || |||||| || ||| | ||||||| Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 || || ||||| | ||||| ||||| ||||||||||| ||||| ||||| ||||| | | Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| ||| | ||| ||||| || | ||||||||||| Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | || || || ||||||||||| Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | | | |||| || | |||||||||||| || | || |||||| | Sbjct 36911 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGAC 36970 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| ||||| | ||||| ||||| ||||||||||||||| Sbjct 36971 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 37030 Query 94901 ATACCTTCTTTGTC 94914 || ||||| ||||| Sbjct 37031 ATTCCTTCCTTGTC 37044 Score = 98.7 bits (108), Expect = 9e-16 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || |||||||| | | | || | ||| | |||||||||||| || | |||| Sbjct 38992 TTTGCATACCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTAT 39051 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 |||| || ||| | |||||||||||| ||||| | ||||| ||||| ||||||| Sbjct 39052 AATCCGACAGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGAT 39111 Query 94893 CTGGAGGAATACCTTCTTTGTC 94914 |||||||||| ||||| ||||| Sbjct 39112 CTGGAGGAATTCCTTCCTTGTC 39133 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | | | |||| || | |||||||||||| || | || |||||| | Sbjct 42227 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 42286 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| ||||| ||||||| ||||| ||||||||||| ||| Sbjct 42287 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCAAAGATCAATCTCTGCTGATCTGGGGGA 42346 Query 94901 ATACCTTCTTTGTC 94914 || ||||| ||||| Sbjct 42347 ATTCCTTCCTTGTC 42360 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | | | |||| || | ||| |||||||| || | || || ||| | Sbjct 37499 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAGTCGGAC 37558 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | |||||||||||| ||||| | ||||| ||||| ||||||||||| ||| Sbjct 37559 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 37618 Query 94901 ATACCTTCTTTGTC 94914 || ||||||||||| Sbjct 37619 ATTCCTTCTTTGTC 37632 >seq4668 Length=1644770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||||||| | || |||||||| || | ||| |||||| | ||| | ||||||| Sbjct 1192719 ACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGATAGAGTTCTTCCATCCTCC 1192778 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 ||||| ||||| | ||||| ||||| |||||||||||||| || || || || || Sbjct 1192779 AGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGGATTCCCTCCTTATC 1192834 >seq347 Length=1176111 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/118 (76%), Gaps = 4/118 (3%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||||||||| ||||| ||||| || | || ||||| | | || ||| ||| | Sbjct 1038898 ACCAAGTGCAAGGTAGACTCCTTCTGAATATTGTAATC--TGAGAGGGTTCTTCCATCTT 1038841 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTC 94914 |||||||||| || | ||||| ||||| ||||||||||| ||||| || || ||||| Sbjct 1038840 CCAGCTGTTTACCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATCCCCTCCTTGTC 1038783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252540487640