Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2557 167 4e-37 >seq2557 Length=1824507 Score = 167 bits (184), Expect = 4e-37 Identities = 200/269 (74%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| || | | | || ||||||||||||| || ||||||||||| || | Sbjct 1645441 CGCCAAGCGTCACCGTA-AGGTGTTGAGAGATAACATCCAGGGCATCACCAAGCCCGCCA 1645383 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 || | ||| |||| ||||||||||||||||||||| |||| ||| | |||| || |||| Sbjct 1645382 TCAGGCGTTTGGCGCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGA 1645323 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 |||| || | ||| | ||||| ||| ||| ||| ||||| || |||||||| Sbjct 1645322 CCCGTGGAGTCCTCAAGGTGTTCCTTGAGAACGTCATCAGGGATGCCGTCACCTATACCG 1645263 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| || | |||||||||||| ||||||| | |||||||| |||| | || | Sbjct 1645262 AACACGCCAAGAGGAAGACTGTCACCGCCATGGACGTTGTCTATGCCCTGAAGAGGCAGG 1645203 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| | || || || || ||||| Sbjct 1645202 GACGTACCCTGTACGGATTCGGCGGTTAA 1645174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79068892196007