Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2557 167 4e-37
>seq2557
Length=1824507
Score = 167 bits (184), Expect = 4e-37
Identities = 200/269 (74%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| |||||||| || | | | || ||||||||||||| || ||||||||||| || |
Sbjct 1645441 CGCCAAGCGTCACCGTA-AGGTGTTGAGAGATAACATCCAGGGCATCACCAAGCCCGCCA 1645383
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|| | ||| |||| ||||||||||||||||||||| |||| ||| | |||| || ||||
Sbjct 1645382 TCAGGCGTTTGGCGCGTCGTGGTGGAGTCAAGCGTATCTCCGGACTCATCTACGAGGAGA 1645323
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|||| || | ||| | ||||| ||| ||| ||| ||||| || ||||||||
Sbjct 1645322 CCCGTGGAGTCCTCAAGGTGTTCCTTGAGAACGTCATCAGGGATGCCGTCACCTATACCG 1645263
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
| ||||| || | |||||||||||| ||||||| | |||||||| |||| | || |
Sbjct 1645262 AACACGCCAAGAGGAAGACTGTCACCGCCATGGACGTTGTCTATGCCCTGAAGAGGCAGG 1645203
Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAA 16699
| |||| | || || || || |||||
Sbjct 1645202 GACGTACCCTGTACGGATTCGGCGGTTAA 1645174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79068892196007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |