Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 412 4e-110
seq891 96.9 4e-15
>seq4046
Length=337920
Score = 412 bits (456), Expect = 4e-110
Identities = 956/1422 (67%), Gaps = 33/1422 (2%)
Strand=Plus/Minus
Query 62600 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62659
||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | ||
Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392
Query 62660 ATTTAGATCTTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 62716
|||||| || ||||| | || || ||||| | | | |||||| |||| ||
Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335
Query 62717 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 62775
|| | || |||| ||||||||| || ||||| || | | | || | || | || |
Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276
Query 62776 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62835
| || ||||| ||||||| || |||||||| ||||| |||||| || |||
Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216
Query 62836 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGG 62892
|| | |||||| || || ||| | | || | || |||||||| | ||
Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156
Query 62893 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62952
||| || || || || || ||||| ||||||| || | | |||| | || || |
Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096
Query 62953 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63012
|||| ||||| || ||||| ||||||| ||| || || || ||| ||||||| |
Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036
Query 63013 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63072
| ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | ||
Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976
Query 63073 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTG 63126
||| | || |||| |||| || ||| || |||| || |||| |||
Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922
Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186
||||| |||||||||||||||||||| | | | |||||| | | || ||||
Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862
Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246
|||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| |
Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802
Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306
||| || ||||| || | ||| | ||||| || || |||||| || | ||| |
Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742
Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366
|||| | | |||||| |||||| ||||| | ||| || || | ||||||| | |
Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682
Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426
| |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| |
Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622
Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484
||||| || ||| ||||| |||| || || ||| ||||| || | |
Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562
Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544
|||| || || || || || || || ||||||| ||||| |||| || || ||
Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504
Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604
|| ||||| || || ||| | ||| |||| || || ||| || | ||| |
Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444
Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664
||| ||| | || ||||||| ||| ||||||||||| |||||| | | | |||||
Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384
Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63724
|||| ||| || ||||| || ||||| |||||| | || |||||||| || || |
Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324
Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784
||| ||||| ||||| ||||| || || | ||| ||||| || |||| | ||||
Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264
Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63844
|| | || ||||| || ||||| | |||| || || || |||||||| || | |
Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204
Query 63845 GTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAG 63903
|| || |||||||| | | || | | | | |||||| | || || || || |
Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-G 121146
Query 63904 AAT-GTTTCCCATTTTTAGGAT-TAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 63961
| | |||| | | ||| || ||| |||| | | |||||| || || ||||||||
Sbjct 121145 ATTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAA 121087
Query 63962 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003
|| || || || || || || ||||| || || |||||
Sbjct 121086 CTTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCT 121045
>seq891
Length=807508
Score = 96.9 bits (106), Expect = 4e-15
Identities = 174/254 (69%), Gaps = 3/254 (1%)
Strand=Plus/Minus
Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354
|||| ||| || ||||| || ||| | |||||||| || || ||||||||
Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407
Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414
|| || ||||| ||||| || || ||||| || | ||| || |||| ||||| |||
Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347
Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474
|| |||||||||||||| || | ||||| || |||| ||| || | | ||| |
Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287
Query 33475 T---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531
| | | |||||||| | ||||| || ||||| || || || ||| || |||||
Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCG 738227
Query 33532 ATGGCATTAAAGAG 33545
|| || || || ||
Sbjct 738226 ATAGCGTTGAACAG 738213
Score = 84.2 bits (92), Expect = 3e-11
Identities = 75/94 (80%), Gaps = 0/94 (0%)
Strand=Plus/Minus
Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059
|||||| ||||| || || ||||| || ||||| || || || ||||| |||||||||||
Sbjct 740840 CATAACACCCATCTTCTGATATTCTCCGACACGCTTCTCAAAGAAATTTGTTTTTCCTTC 740781
Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTG 33093
|| || |||| |||||||| || || ||||||
Sbjct 740780 CAGAGAAATATGCTCCATGAAGTCGAAAGGATTG 740747
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622893478590840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |