Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq4046 412 4e-110 seq891 96.9 4e-15 >seq4046 Length=337920 Score = 412 bits (456), Expect = 4e-110 Identities = 956/1422 (67%), Gaps = 33/1422 (2%) Strand=Plus/Minus Query 62600 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62659 ||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | || Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392 Query 62660 ATTTAGATCTTGTGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 62716 |||||| || ||||| | || || ||||| | | | |||||| |||| || Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335 Query 62717 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 62775 || | || |||| ||||||||| || ||||| || | | | || | || | || | Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276 Query 62776 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62835 | || ||||| ||||||| || |||||||| ||||| |||||| || ||| Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216 Query 62836 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGG 62892 || | |||||| || || ||| | | || | || |||||||| | || Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156 Query 62893 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62952 ||| || || || || || ||||| ||||||| || | | |||| | || || | Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096 Query 62953 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63012 |||| ||||| || ||||| ||||||| ||| || || || ||| ||||||| | Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036 Query 63013 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63072 | ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | || Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976 Query 63073 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTG 63126 ||| | || |||| |||| || ||| || |||| || |||| ||| Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922 Query 63127 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 63186 ||||| |||||||||||||||||||| | | | |||||| | | || |||| Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862 Query 63187 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63246 |||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| | Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802 Query 63247 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63306 ||| || ||||| || | ||| | ||||| || || |||||| || | ||| | Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742 Query 63307 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63366 |||| | | |||||| |||||| ||||| | ||| || || | ||||||| | | Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682 Query 63367 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63426 | |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622 Query 63427 TACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63484 ||||| || ||| ||||| |||| || || ||| ||||| || | | Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562 Query 63485 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTC 63544 |||| || || || || || || || ||||||| ||||| |||| || || || Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504 Query 63545 ATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63604 || ||||| || || ||| | ||| |||| || || ||| || | ||| | Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444 Query 63605 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 63664 ||| ||| | || ||||||| ||| ||||||||||| |||||| | | | ||||| Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384 Query 63665 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63724 |||| ||| || ||||| || ||||| |||||| | || |||||||| || || | Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324 Query 63725 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63784 ||| ||||| ||||| ||||| || || | ||| ||||| || |||| | |||| Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264 Query 63785 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63844 || | || ||||| || ||||| | |||| || || || |||||||| || | | Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204 Query 63845 GTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACT-TGAAATAATCGGAG 63903 || || |||||||| | | || | | | | |||||| | || || || || | Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGG-G 121146 Query 63904 AAT-GTTTCCCATTTTTAGGAT-TAACATAGTTGAATAAATCCTCCATCACTTCACTAAA 63961 | | |||| | | ||| || ||| |||| | | |||||| || || |||||||| Sbjct 121145 ATTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAA 121087 Query 63962 TAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCT 64003 || || || || || || || ||||| || || ||||| Sbjct 121086 CTTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCT 121045 >seq891 Length=807508 Score = 96.9 bits (106), Expect = 4e-15 Identities = 174/254 (69%), Gaps = 3/254 (1%) Strand=Plus/Minus Query 33295 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 33354 |||| ||| || ||||| || ||| | |||||||| || || |||||||| Sbjct 738466 AACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTACTG 738407 Query 33355 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCA 33414 || || ||||| ||||| || || ||||| || | ||| || |||| ||||| ||| Sbjct 738406 AATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTACCA 738347 Query 33415 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTG 33474 || |||||||||||||| || | ||||| || |||| ||| || | | ||| | Sbjct 738346 GAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGTTT 738287 Query 33475 T---CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33531 | | | |||||||| | ||||| || ||||| || || || ||| || ||||| Sbjct 738286 TTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTTCG 738227 Query 33532 ATGGCATTAAAGAG 33545 || || || || || Sbjct 738226 ATAGCGTTGAACAG 738213 Score = 84.2 bits (92), Expect = 3e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 33000 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33059 |||||| ||||| || || ||||| || ||||| || || || ||||| ||||||||||| Sbjct 740840 CATAACACCCATCTTCTGATATTCTCCGACACGCTTCTCAAAGAAATTTGTTTTTCCTTC 740781 Query 33060 CAATGATATATTTTCCATGAAATCAAACGGATTG 33093 || || |||| |||||||| || || |||||| Sbjct 740780 CAGAGAAATATGCTCCATGAAGTCGAAAGGATTG 740747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622893478590840