Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4046 181 3e-40 >seq4046 Length=337920 Score = 181 bits (200), Expect = 3e-40 Identities = 560/858 (65%), Gaps = 14/858 (2%) Strand=Plus/Plus Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513 || ||||| ||||| ||| | |||||| | || ||||| | |||| |||| | || Sbjct 121306 CCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATATTGACTCTGCC 121365 Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC---GTGTATTCACGCACGCCACGCCAACAATG 363570 |||||||| || | ||||| | | | | | || || ||||| | || || | Sbjct 121366 ATTGAAACCTACGATCTTCT---TTCGCAGAGACTGTTTACTCACGCTTCTCCGACCCTA 121422 Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630 | || || | |||| ||| ||| | || || ||||| ||||| | ||| Sbjct 121423 TTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTATGGCCTCG 121482 Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690 ||||| ||||| ||||| | || || | || | || ||||| || |||||| ||| Sbjct 121483 GATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCAAGTCTGCC 121542 Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATTCGCGGCA 363748 || || || || | | ||| | | ||||| || | || |||||| ||| | Sbjct 121543 GGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCA--TACATTGCCGGAA 121600 Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808 | || |||| || ||| || |||| ||||| | |||||| | || || || || | Sbjct 121601 CCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAGCCAGAT 121660 Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868 | || || ||||| ||| ||| | || || || ||||| || || || || | Sbjct 121661 ATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTACCTTGAACCCTGGC 121720 Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928 ||| |||||||| ||||| | || | ||| || || |||||||| | | Sbjct 121721 ATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGGAGAACAGAG 121780 Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988 | | ||||||||||| || | ||| || |||| | || |||||| | || ||||| | Sbjct 121781 CTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTAGAGGCTG 121840 Query 363989 GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048 | ||||| || | || || || | | || || ||| || || ||||| | Sbjct 121841 ATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCATGAGGTTTGGGGAG 121900 Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT-AAGACAATT 364107 |||| | | ||||| || || || |||||| ||| ||| | || | ||||| | Sbjct 121901 ACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACGCG-TCTTGAAGACTGTA 121959 Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167 || ||| |||| |||| ||| || || || || || |||||||| ||||| || || Sbjct 121960 AAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGACCGGAACTCCGTAC 122019 Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227 ||||||||||| || | || ||| | || |||||||||||| | || || || | ||| Sbjct 122020 ATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATCTAGGAACCA-TCAA 122078 Query 364228 CAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286 | | || || || || || || | |||||| |||| || || ||| ||||| || Sbjct 122079 ATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATGAGGTGGCCGTCTG 122138 Query 364287 TAACCTTGCGTCGATCGC 364304 ||||| || || || || Sbjct 122139 CAACCTAGCCTCCATTGC 122156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303238392095018