Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 181 3e-40
>seq4046
Length=337920
Score = 181 bits (200), Expect = 3e-40
Identities = 560/858 (65%), Gaps = 14/858 (2%)
Strand=Plus/Plus
Query 363454 CCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCG 363513
|| ||||| ||||| ||| | |||||| | || ||||| | |||| |||| | ||
Sbjct 121306 CCCCAGCAGATGTTGATGAGAGTTGCTGTAGGAATCCACGGAGAGGATATTGACTCTGCC 121365
Query 363514 ATTGAAACATATAAGCTTCTAAGTGCTC---GTGTATTCACGCACGCCACGCCAACAATG 363570
|||||||| || | ||||| | | | | | || || ||||| | || || |
Sbjct 121366 ATTGAAACCTACGATCTTCT---TTCGCAGAGACTGTTTACTCACGCTTCTCCGACCCTA 121422
Query 363571 TACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGAC 363630
| || || | |||| ||| ||| | || || ||||| ||||| | |||
Sbjct 121423 TTTAACGCCGCTACTCCCCGTCCCCAGCTTTCATCCTGCTTCCTTCTTACTATGGCCTCG 121482
Query 363631 GATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCA 363690
||||| ||||| ||||| | || || | || | || ||||| || |||||| |||
Sbjct 121483 GATTCTATCGAAGGTATTTACGATACCTTGAAACAGTGCGCTCTAATCTCCAAGTCTGCC 121542
Query 363691 GGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACA--GAACAGTTACATTCGCGGCA 363748
|| || || || | | ||| | | ||||| || | || |||||| ||| |
Sbjct 121543 GGAGGGATCGGGCTCAATGTTCACTGTATCCGTGCTCATGGGTCA--TACATTGCCGGAA 121600
Query 363749 CAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGT 363808
| || |||| || ||| || |||| ||||| | |||||| | || || || || |
Sbjct 121601 CCAACGGTCACTCTAACGGGTTGATTCCTATGCTGAGAGTGTTTAATAACACAGCCAGAT 121660
Query 363809 ACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATC 363868
| || || ||||| ||| ||| | || || || ||||| || || || || |
Sbjct 121661 ATGTTGATCAGGGAGGAAATAAGAGACCTGGAGCATTCGCTATCTACCTTGAACCCTGGC 121720
Query 363869 ATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTG 363928
||| |||||||| ||||| | || | ||| || || |||||||| | |
Sbjct 121721 ATGGAGATATTTTCGAGTTCTTGGATTTGAAGAAGAATCATGGTAAAGAGGAGAACAGAG 121780
Query 363929 CACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAG 363988
| | ||||||||||| || | ||| || |||| | || |||||| | || ||||| |
Sbjct 121781 CTAGGGATCTGTTCTACGCTATGTGGATTCCTGATCTCTTCATGAAGAGGGTAGAGGCTG 121840
Query 363989 GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048
| ||||| || | || || || | | || || ||| || || ||||| |
Sbjct 121841 ATGGAGATTGGAGTCTAATGTGTCCTGACCAGTCCCCTGGACTTCATGAGGTTTGGGGAG 121900
Query 364049 ACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGT-AAGACAATT 364107
|||| | | ||||| || || || |||||| ||| ||| | || | ||||| |
Sbjct 121901 ACGAGTTCGAGGCTCTGTATGAGAAATATGAAAAGGAAGGACGCG-TCTTGAAGACTGTA 121959
Query 364108 CCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTAT 364167
|| ||| |||| |||| ||| || || || || || |||||||| ||||| || ||
Sbjct 121960 AAAGCTCAGCAGCTCTGGTATGCTATTATTGAATCCCAAATTGAGACCGGAACTCCGTAC 122019
Query 364168 ATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAG 364227
||||||||||| || | || ||| | || |||||||||||| | || || || | |||
Sbjct 122020 ATGTTGTACAAGGACGCCTGTAACAGAAAATCCAACCAGCAGAATCTAGGAACCA-TCAA 122078
Query 364228 CAGAGC-AACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATG 364286
| | || || || || || || | |||||| |||| || || ||| ||||| ||
Sbjct 122079 ATGCTCAAATCTGTGCACAGAAATCGTCGAATACTCCGCCCCTGATGAGGTGGCCGTCTG 122138
Query 364287 TAACCTTGCGTCGATCGC 364304
||||| || || || ||
Sbjct 122139 CAACCTAGCCTCCATTGC 122156
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303238392095018
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |