Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4046 136 4e-27 seq6057 95.1 1e-14 >seq4046 Length=337920 Score = 136 bits (150), Expect = 4e-27 Identities = 418/643 (65%), Gaps = 5/643 (1%) Strand=Plus/Minus Query 145126 CTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGA 145185 |||||| |||||||| || ||||| || | || || ||||| |||| | | || Sbjct 122652 CTCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGA 122593 Query 145186 ATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGT 145245 || | | || ||||| || | |||| ||| || ||||||| ||| ||| Sbjct 122592 GTTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGT 122533 Query 145246 CGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAA 145305 || | || ||||||| || || |||| | |||| || | || || || | Sbjct 122532 GGGTGTTACTCCCCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATA 122473 Query 145306 GGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATA 145365 || ||| | ||| | | ||| ||||| || || || |||||||| ||| | || Sbjct 122472 GGTTTCATAAGTACCCAATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTA 122413 Query 145366 AATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCG 145425 ||| || || ||||| |||| || || | ||||| | ||| | || | | Sbjct 122412 AATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGATTCGAATGGGAATCT 122353 Query 145426 CAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCAT 145485 || || | | ||||| || || ||||| || || | || || || | || ||| Sbjct 122352 CATGAGAATGTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCAT 122293 Query 145486 GTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTT 145545 |||||| ||| ||| || | ||||| |||| |||||||||||| || | ||| Sbjct 122292 GTTGCTTTTCCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTT 122233 Query 145546 TC-GCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAA 145604 || ||| | ||||| | | | | || ||| || |||||| | | || |||| Sbjct 122232 TCTGCAGG-CAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAG---GTCTTGTCAG 122177 Query 145605 CGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGT 145664 | ||| | | |||||||| || || || | || || || ||| ||| || | | Sbjct 122176 GGTTCACGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGG 122117 Query 145665 CGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCT 145724 || ||||| ||||| || | ||||| ||| |||||||||||||| ||||| |||| Sbjct 122116 CGGAGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCT 122057 Query 145725 GATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767 | || ||| ||||| || ||||||||||| | ||||||||| Sbjct 122056 GGTTGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGG 122014 >seq6057 Length=130802 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || || ||||| ||||| ||||||||| || || | ||||| || ||||| || Sbjct 36485 GTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCA 36544 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| |||| || | |||||| || || || |||||||| ||||| || || ||| Sbjct 36545 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTA 36604 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | ||| | |||| | | ||||| || | ||| | |||||||||||||| || Sbjct 36605 ACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTC 36664 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 36665 TTGACGAAGATCTGCAT 36681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471972094796160