Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 136 4e-27
seq6057 95.1 1e-14
>seq4046
Length=337920
Score = 136 bits (150), Expect = 4e-27
Identities = 418/643 (65%), Gaps = 5/643 (1%)
Strand=Plus/Minus
Query 145126 CTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGA 145185
|||||| |||||||| || ||||| || | || || ||||| |||| | | ||
Sbjct 122652 CTCGTTGTTGCCCAGAATCTGAGCAGTGGAAGCTGTTGGCATAGGAGCCAGGAGCAGAGA 122593
Query 145186 ATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGT 145245
|| | | || ||||| || | |||| ||| || ||||||| ||| |||
Sbjct 122592 GTTCCTTACACCATGCTTTGCAATCTGGGCCTTCAGCTTAGCCCAATCATGGAGCTCAGT 122533
Query 145246 CGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAA 145305
|| | || ||||||| || || |||| | |||| || | || || || |
Sbjct 122532 GGGTGTTACTCCCCACATATCATATTGCAGCCTACCCTGACTAACCGGAGAACCAGGATA 122473
Query 145306 GGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATA 145365
|| ||| | ||| | | ||| ||||| || || || |||||||| ||| | ||
Sbjct 122472 GGTTTCATAAGTACCCAATTGCTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTA 122413
Query 145366 AATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCG 145425
||| || || ||||| |||| || || | ||||| | ||| | || | |
Sbjct 122412 AATAGTTTCAAAGATTTGTTTGTTTAGAAGTTTAGCTTCGTTAGATTCGAATGGGAATCT 122353
Query 145426 CAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCAT 145485
|| || | | ||||| || || ||||| || || | || || || | || |||
Sbjct 122352 CATGAGAATGTACGCATCAGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCAT 122293
Query 145486 GTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTT 145545
|||||| ||| ||| || | ||||| |||| |||||||||||| || | |||
Sbjct 122292 GTTGCTTTTCCGTGCCTCCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTT 122233
Query 145546 TC-GCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAA 145604
|| ||| | ||||| | | | | || ||| || |||||| | | || ||||
Sbjct 122232 TCTGCAGG-CAACCTTGGATACCTTCTTCAGCTTCTCGAAGTCATAG---GTCTTGTCAG 122177
Query 145605 CGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGT 145664
| ||| | | |||||||| || || || | || || || ||| ||| || | |
Sbjct 122176 GGTTCACGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGG 122117
Query 145665 CGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCT 145724
|| ||||| ||||| || | ||||| ||| |||||||||||||| ||||| ||||
Sbjct 122116 CGGAGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCT 122057
Query 145725 GATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGG 145767
| || ||| ||||| || ||||||||||| | |||||||||
Sbjct 122056 GGTTGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGG 122014
>seq6057
Length=130802
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097
|| || ||||| ||||| ||||||||| || || | ||||| || ||||| ||
Sbjct 36485 GTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCA 36544
Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157
||| |||| || | |||||| || || || |||||||| ||||| || || |||
Sbjct 36545 GCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTA 36604
Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217
| | ||| | |||| | | ||||| || | ||| | |||||||||||||| ||
Sbjct 36605 ACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTC 36664
Query 131218 TTTACGAAAATCTGCAT 131234
|| ||||| ||||||||
Sbjct 36665 TTGACGAAGATCTGCAT 36681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471972094796160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |