Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6679 118 7e-22 seq6659 113 3e-20 seq1635 104 2e-17 seq6057 98.7 7e-16 >seq6679 Length=1395180 Score = 118 bits (130), Expect = 7e-22 Identities = 191/275 (69%), Gaps = 0/275 (0%) Strand=Plus/Minus Query 6210 TACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTC 6269 || || ||||| | ||| || ||||| ||||||||||| |||||||| || || || Sbjct 843995 TATAAGATGCCTAGGATCCAGGCTAAGGTTGAGGGTAAGGGGAACGGTATCAAGACTGTG 843936 Query 6270 ATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAA 6329 | ||||||||| ||| || || ||||| | || ||| | |||||| || || Sbjct 843935 CTGGTCAACATGGTTGATGTTGCACGTGCGCTGGCTCGTCCTCCGACCTACGTCACCAAG 843876 Query 6330 TATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATC 6389 || || || || || || || |||||||| || | |||| || |||||| | | ||| Sbjct 843875 TACTTTGGTTGTGAGCTGGGAGCTCAGACCCAATCTGATGTGAAGAACGAGAGGTATATC 843816 Query 6390 GTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAG 6449 || || || | ||| | | | ||||||||||| | || || || || || ||| Sbjct 843815 GTGAATGGGTGCCATGAGGCCGGAAAGCTGCAGGATATGCTGGATGGTTTCATCAATAAG 843756 Query 6450 TTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||| |||||| ||||||| ||||| || || Sbjct 843755 TTTGTTCTGTGTGAACAATGCGAAAACCCCGAAAC 843721 >seq6659 Length=55174 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 18917 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 18858 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| ||||||||||||| || ||| |||||| Sbjct 18857 TAATCCATTCATGCGCGTCAGTAGTTATCTGACGA 18823 Score = 96.9 bits (106), Expect = 2e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||||||||||| ||||| |||| |||||| || ||||||||||| | || Sbjct 26078 CTCTCTTCAAAGTTCTTTTCAAGTTTCCATCACTGTACTTATTTGCTATCGGTCTTGGGG 26019 Query 20009 TAATATTTAGCCTTATTA 20026 ||||||||||||| || Sbjct 26018 GCATATTTAGCCTTAGTA 26001 >seq1635 Length=773204 Score = 104 bits (114), Expect = 2e-17 Identities = 71/80 (89%), Gaps = 5/80 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||||||||||| || |||||||| Sbjct 684750 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 684809 Query 25957 TAATCCTTTCATGCGCGTCA 25976 |||||| ||||||||||||| Sbjct 684810 TAATCCATTCATGCGCGTCA 684829 >seq6057 Length=130802 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||| ||||||||| ||||| |||||||||||||| |||| | | | | || || Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | ||| ||||| || || || | | || ||||| | ||| | ||||| |||||| | Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||| || |||| || |||| | | || || || | || || |||||| Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| || ||||| |||||||| Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334919037116069