Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq6679 118 7e-22
seq6659 113 3e-20
seq1635 104 2e-17
seq6057 98.7 7e-16
>seq6679
Length=1395180
Score = 118 bits (130), Expect = 7e-22
Identities = 191/275 (69%), Gaps = 0/275 (0%)
Strand=Plus/Minus
Query 6210 TACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTC 6269
|| || ||||| | ||| || ||||| ||||||||||| |||||||| || || ||
Sbjct 843995 TATAAGATGCCTAGGATCCAGGCTAAGGTTGAGGGTAAGGGGAACGGTATCAAGACTGTG 843936
Query 6270 ATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAA 6329
| ||||||||| ||| || || ||||| | || ||| | |||||| || ||
Sbjct 843935 CTGGTCAACATGGTTGATGTTGCACGTGCGCTGGCTCGTCCTCCGACCTACGTCACCAAG 843876
Query 6330 TATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTCATC 6389
|| || || || || || || |||||||| || | |||| || |||||| | | |||
Sbjct 843875 TACTTTGGTTGTGAGCTGGGAGCTCAGACCCAATCTGATGTGAAGAACGAGAGGTATATC 843816
Query 6390 GTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGCAAG 6449
|| || || | ||| | | | ||||||||||| | || || || || || |||
Sbjct 843815 GTGAATGGGTGCCATGAGGCCGGAAAGCTGCAGGATATGCTGGATGGTTTCATCAATAAG 843756
Query 6450 TTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484
||||| |||||| ||||||| ||||| || ||
Sbjct 843755 TTTGTTCTGTGTGAACAATGCGAAAACCCCGAAAC 843721
>seq6659
Length=55174
Score = 113 bits (124), Expect = 3e-20
Identities = 82/95 (86%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 18917 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 18858
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||| || ||| ||||||
Sbjct 18857 TAATCCATTCATGCGCGTCAGTAGTTATCTGACGA 18823
Score = 96.9 bits (106), Expect = 2e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008
|||||||||||||||||||||| ||||| |||| |||||| || ||||||||||| | ||
Sbjct 26078 CTCTCTTCAAAGTTCTTTTCAAGTTTCCATCACTGTACTTATTTGCTATCGGTCTTGGGG 26019
Query 20009 TAATATTTAGCCTTATTA 20026
||||||||||||| ||
Sbjct 26018 GCATATTTAGCCTTAGTA 26001
>seq1635
Length=773204
Score = 104 bits (114), Expect = 2e-17
Identities = 71/80 (89%), Gaps = 5/80 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
||| ||||||||||||||| |||||||||||||||||||||||| || ||||||||
Sbjct 684750 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 684809
Query 25957 TAATCCTTTCATGCGCGTCA 25976
|||||| |||||||||||||
Sbjct 684810 TAATCCATTCATGCGCGTCA 684829
>seq6057
Length=130802
Score = 98.7 bits (108), Expect = 7e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168
|||| ||||||||| ||||| |||||||||||||| |||| | | | | || ||
Sbjct 36473 ACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAATCGGACAGAGTTCTTCCATCCTCC 36532
Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228
| ||| ||||| || || || | | || ||||| | ||| | ||||| |||||| |
Sbjct 36533 AGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGA 36592
Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288
|| || ||| || |||| || |||| | | || || || | || || ||||||
Sbjct 36593 ATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCCTCGACCTCCAGGGTGATGGTTTTA 36652
Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317
|| || ||||| || ||||| ||||||||
Sbjct 36653 CCGGTTAAGGTCTTGACGAAGATCTGCAT 36681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334919037116069
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |