Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 416 4e-111
>seq4046
Length=337920
Score = 416 bits (460), Expect = 4e-111
Identities = 955/1422 (67%), Gaps = 31/1422 (2%)
Strand=Plus/Minus
Query 62455 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62514
||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | ||
Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392
Query 62515 ATTTAGATCTTGCGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 62571
|||||| || ||||| | || || ||||| | | | |||||| |||| ||
Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335
Query 62572 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 62630
|| | || |||| ||||||||| || ||||| || | | | || | || | || |
Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276
Query 62631 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62690
| || ||||| ||||||| || |||||||| ||||| |||||| || |||
Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216
Query 62691 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62747
|| | |||||| || || ||| | | || | || |||||||| | |
Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156
Query 62748 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62807
||| || || || || || ||||| ||||||| || | | |||| | || || |
Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096
Query 62808 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 62867
|||| ||||| || ||||||||||||| ||| || || || ||| ||||||| |
Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036
Query 62868 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 62927
| ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | ||
Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976
Query 62928 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 62981
||| | || |||| |||| || ||| || | || || |||| |||
Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922
Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041
||||| |||||||||||||||||||| | | |||||||| | | || ||||
Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862
Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101
|||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| |
Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802
Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161
||| || ||||| || | ||| | ||||| || || |||||| || | ||| |
Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742
Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221
|||| | | |||||| |||||| ||||| | ||| || || | ||||||| | |
Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682
Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281
| |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| |
Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622
Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63339
|| || || ||| ||||| || | || || ||| ||||| || | |
Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562
Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399
|||| || || || || || || || ||||||| ||||| |||| || |||||
Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504
Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459
|| || || || ||| ||| ||| |||| || || ||| || | ||| |
Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444
Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519
||| ||| | || ||||||| ||| |||||||||||||||||| | | | |||||
Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384
Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63579
|||| ||| || ||||| || ||||| |||||| | || |||||||| || || |
Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324
Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639
||| ||||| ||||| ||||| || || | ||| ||||| || |||| | ||||
Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264
Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63699
|| | || ||||| || ||||| | |||| || || || |||||||| || | |
Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204
Query 63700 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATAGGAA 63758
|| || |||||||| | | || || | | | || ||| | || || || || |
Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGGGA 121145
Query 63759 AATGTTTCCCATTTTTAGGAT-TGACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 63817
|||| | | ||| || ||| |||| | | |||||| || || ||||||||
Sbjct 121144 TTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAAC 121086
Query 63818 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859
|| || || ||||| || || ||||| || || ||||||
Sbjct 121085 TTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCTA 121044
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633577357160400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |