Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq4046 416 4e-111 >seq4046 Length=337920 Score = 416 bits (460), Expect = 4e-111 Identities = 955/1422 (67%), Gaps = 31/1422 (2%) Strand=Plus/Minus Query 62455 CTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTT 62514 ||| || || ||||| || || || | || ||||| ||||| ||||| ||||| | || Sbjct 122451 CTCGGCAAGCTCACAGCTTGCTTCCAGAGCTCCGTAGTAAATAGTTTCAAAGATTTGTTT 122392 Query 62515 ATTTAGATCTTGCGCTTCCAGGCTA---TCAAATGGATAATTTAAGAGAATAAACGCGTC 62571 |||||| || ||||| | || || ||||| | | | |||||| |||| || Sbjct 122391 GTTTAGAAGTTTAGCTTC---GTTAGATTCGAATGGGAATCTCATGAGAATGTACGCATC 122335 Query 62572 TGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCA-GCTT 62630 || | || |||| ||||||||| || ||||| || | | | || | || | || | Sbjct 122334 AGCCAGGCCCTGAATACCAATACCAATTGGTCTGTGACGCATGTT-GCTTTTCCGTGCCT 122276 Query 62631 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62690 | || ||||| ||||||| || |||||||| ||||| |||||| || ||| Sbjct 122275 CCTTAACGGGATAGTAATTAACGTCGATAATTTTGTTGAGGTTTCTGCAGGCAACCTTGG 122216 Query 62691 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATG 62747 || | |||||| || || ||| | | || | || |||||||| | | Sbjct 122215 ATACCTTCTTCAGCTTCTCGAAGTCATAGGTCTTGTCAGGGTTCACGAACATGTTGACGG 122156 Query 62748 CAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 62807 ||| || || || || || ||||| ||||||| || | | |||| | || || | Sbjct 122155 CAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGGAGTATTCGACGATTTCTG 122096 Query 62808 TGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 62867 |||| ||||| || ||||||||||||| ||| || || || ||| ||||||| | Sbjct 122095 TGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGTTGGATTTTCTGTTACAGG 122036 Query 62868 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 62927 | ||||| || | ||| | ||||| || || ||||| || ||||| ||||| || | || Sbjct 122035 CGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGGATTCAATAATAGCATACC 121976 Query 62928 AGA-CGACTCGAGCCTTTA-----TTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTG 62981 ||| | || |||| |||| || ||| || | || || |||| ||| Sbjct 121975 AGAGCTGCT-GAGCTTTTACAGTCTTCAAGACGCGT----CCTTCCT-TTTCATATTTCT 121922 Query 62982 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGAC 63041 ||||| |||||||||||||||||||| | | |||||||| | | || |||| Sbjct 121921 CATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGGGACTGGTCAGGAC 121862 Query 63042 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 63101 |||| | ||| ||||| ||| ||| || | ||||| ||||||||||||||||| | Sbjct 121861 ACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGATCAGGAATCCACA 121802 Query 63102 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 63161 ||| || ||||| || | ||| | ||||| || || |||||| || | ||| | Sbjct 121801 TAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTCTTCTTCAAATCCA 121742 Query 63162 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTT 63221 |||| | | |||||| |||||| ||||| | ||| || || | ||||||| | | Sbjct 121741 AGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAATGCTCCAGGTCTCT 121682 Query 63222 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 63281 | |||||||||||||| | ||||| || ||||||||| | ||||||| ||| ||||| | Sbjct 121681 TATTTCCTCCCTGATCAACATATCTGGCTGTGTTATTAAACACTCTCAGCATAGGAATCA 121622 Query 63282 TACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACT 63339 || || || ||| ||||| || | || || ||| ||||| || | | Sbjct 121621 ACCCGTTAGAGTGACCGTTGGTTCCGGCAATGTATGACCCATGAGCACGGATACAGTGAA 121562 Query 63340 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 63399 |||| || || || || || || || ||||||| ||||| |||| || ||||| Sbjct 121561 CATTG--AGCCCGATCCCTCCGGCAGACTTGGAGATTAGAGCGCACTGTTTCAAGGTATC 121504 Query 63400 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 63459 || || || || ||| ||| ||| |||| || || ||| || | ||| | Sbjct 121503 GTAAATACCTTCGATAGAATCCGAGGCCATAGTAAGAAGGAAGCAGGATGAAAGCTGGGG 121444 Query 63460 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAG 63519 ||| ||| | || ||||||| ||| |||||||||||||||||| | | | ||||| Sbjct 121443 ACGGGGAGTAGCGGCGTTAAATAGGGTCGGAGAAGCGTGAGTAAACAGTCTCTGCGAAAG 121384 Query 63520 TAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACG 63579 |||| ||| || ||||| || ||||| |||||| | || |||||||| || || | Sbjct 121383 AAGATCGTAGGTTTCAATGGCAGAGTCAATATCCTCTCCGTGGATTCCTACAGCAACTCT 121324 Query 63580 CATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTT 63639 ||| ||||| ||||| ||||| || || | ||| ||||| || |||| | |||| Sbjct 121323 CATCAACATCTGCTGGGGTCTCTCCACCACCTTCTTGTTGATCTTCAGGAGGTAGCTACG 121264 Query 63640 TTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGA 63699 || | || ||||| || ||||| | |||| || || || |||||||| || | | Sbjct 121263 CTCTAGGGTCTTAAACCCGAAATACTGGTATTGGAAATCACGCTCGTAAATGATGGCAGC 121204 Query 63700 GTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATAGGAA 63758 || || |||||||| | | || || | | | || ||| | || || || || | Sbjct 121203 GTCAAGACGATCCTTATTCTCCTGGACAACTTTCCT-GTGATAGTCAGAGATCATTGGGA 121145 Query 63759 AATGTTTCCCATTTTTAGGAT-TGACATAGTTGAATAAATCCTCCATCACTTCACTAAAT 63817 |||| | | ||| || ||| |||| | | |||||| || || |||||||| Sbjct 121144 TTGGTTTAACTGTAGTAGCATGCTTCAT-GTTGTACAGATCCTCAATGACGTCACTAAAC 121086 Query 63818 AGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 63859 || || || ||||| || || ||||| || || |||||| Sbjct 121085 TTCTTCTTCGTCTCTTTATGCAGGTTTGAAACCGCGATTCTA 121044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633577357160400