Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6057 118 9e-22 >seq6057 Length=130802 Score = 118 bits (130), Expect = 9e-22 Identities = 168/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| || ||||||||| ||||||| | || || ||| | | Sbjct 36681 ATGCAGATCTTCGTCAAGACCTTAACCGGTAAAACCATCACCCTGGAGGTCGAGGCTAGT 36622 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || | |||||| | ||| | || | ||| ||||| ||||| ||||| || || || Sbjct 36621 GATAGCATCGAGAACGTTAAGGCCAAGATTCAG-GACAAGGAAGGAATTCCCCCAGATCA 36563 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || || || || ||| | || |||| | ||| || ||||||||| Sbjct 36562 GCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTACAA 36503 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 |||||| || ||||| || || ||| | || || ||||| || ||||||||||| Sbjct 36502 TATTCAGAAGGAATCAACTCTTCATCTGGTTCTCAGGCTCAGGGGAGGAAATTA 36449 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || ||||||| | || || ||| | | Sbjct 36909 ATGCAGATCTTCGTCAAGACCTTGACCGGAAAGACCATCACCCTGGAGGTCGAGGCTAGT 36850 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||| || ||| | ||| || ||| ||||| ||||| ||||| || || || Sbjct 36849 GACAGCATTGAGAACGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 36790 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || || || || || || | || |||| | ||| || |||||||||| Sbjct 36789 CAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTACAAT 36730 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||| || ||||| || || || | || || ||||| |||||||| Sbjct 36729 ATTCAGAAGGAATCTACTCTTCACCTTGTTCTCAGGCTTAGAGGAGG 36683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || || || ||| | | || ||||| || || || | || Sbjct 42360 GACAAGGAAGGAATTCCCCCAGATCAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAG 42301 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | ||| || ||||||||||||||| || ||||| || || ||| | || || Sbjct 42300 GATGGAAGAACTCTGTCCGATTACAATATTCAGAAGGAATCTACTCTTCATCTGGTTCTC 42241 Query 25212 AGGCTAAGAGGAGG 25225 ||||| |||||||| Sbjct 42240 AGGCTTAGAGGAGG 42227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433291565104685