Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2757 138 1e-27
seq891 132 5e-26
seq6223 123 3e-23
seq6801 95.1 1e-14
>seq2757
Length=464407
Score = 138 bits (152), Expect = 1e-27
Identities = 99/112 (88%), Gaps = 3/112 (3%)
Strand=Plus/Plus
Query 126244 GAATTTTGCGCTTCTATTTA-CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAA 126302
||||||||| ||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct 325784 GAATTTTGCTCTTATACAGAACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAA 325843
Query 126303 GATCTGGTTCCCTC--GGGAGCGTGGGTTCGAACCCCACACCTGACAAATTA 126352
| |||||||| | | | ||||||||||||||||||||||||||||||| ||
Sbjct 325844 GCTCTGGTTCTCGCAAGAGAGCGTGGGTTCGAACCCCACACCTGACAAAATA 325895
>seq891
Length=807508
Score = 132 bits (146), Expect = 5e-26
Identities = 190/268 (71%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140
|| ||| ||||| || ||||| || ||||| || ||||| | || || | || || |
Sbjct 738468 TGAACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTAC 738409
Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200
||||||| | || || | ||| ||||| ||||| | ||| || || | || |||||||
Sbjct 738408 TGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTAC 738349
Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260
|||| || || || ||||| || | ||||| || | ||| | |||||| || | |||
Sbjct 738348 CAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGT 738289
Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320
|| | | ||||| || | ||||| || || |||||||| | ||| | ||||
Sbjct 738288 TTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTT 738229
Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTC 93348
|||||||||| || || | |||||||||
Sbjct 738228 CGATAGCGTTGAACAGTTTATCTCGCTC 738201
>seq6223
Length=1510710
Score = 123 bits (136), Expect = 3e-23
Identities = 86/97 (89%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGA 126320
|| ||||||||||||||||||||||||||| |||||||||| |||| ||| | | | ||
Sbjct 177753 ACCGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATTCTCGCAAGAGA 177812
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||||||||||||||||||||| |||||| ||
Sbjct 177813 GCGTGGGTTCGAACCCCACACCTGACAGATTATTTTT 177849
>seq6801
Length=1355208
Score = 95.1 bits (104), Expect = 1e-14
Identities = 85/105 (81%), Gaps = 4/105 (4%)
Strand=Plus/Plus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGA 126320
|||||||||||||||||||||||||||||| ||||||||| ||| | || |
Sbjct 898013 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGTGAGATTTAAGCTCTCATAATCGTAAGATT 898072
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATT 126363
||||||||||||||||||||||||||| | ||||| || ||||
Sbjct 898073 GCGTGGGTTCGAACCCCACACCTGACAGATCTTATTTTTATAATT 898117
Score = 82.4 bits (90), Expect = 9e-11
Identities = 72/90 (80%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 162737 AAAAAATCAGAATTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGA 162796
|||||| ||| || |||| |||||| || ||||||||||| | || || |||||
Sbjct 869341 AAAAAAAGAGATTTGCCTCCTGTGAGGATTGAACTCACGACCCCTGGTTTACGAGACCAG 869400
Query 162797 TGCTCTAACCACTGAGCTAAAGAGGCTACA 162826
||||||| ||||||||||||||||||| ||
Sbjct 869401 TGCTCTATCCACTGAGCTAAAGAGGCTTCA 869430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556812777716760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |