Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2757 138 1e-27 seq891 132 5e-26 seq6223 123 3e-23 seq6801 95.1 1e-14 >seq2757 Length=464407 Score = 138 bits (152), Expect = 1e-27 Identities = 99/112 (88%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 126244 GAATTTTGCGCTTCTATTTA-CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAA 126302 ||||||||| ||| || | ||||||||||||||||||||||||||||||||||||||| Sbjct 325784 GAATTTTGCTCTTATACAGAACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAA 325843 Query 126303 GATCTGGTTCCCTC--GGGAGCGTGGGTTCGAACCCCACACCTGACAAATTA 126352 | |||||||| | | | ||||||||||||||||||||||||||||||| || Sbjct 325844 GCTCTGGTTCTCGCAAGAGAGCGTGGGTTCGAACCCCACACCTGACAAAATA 325895 >seq891 Length=807508 Score = 132 bits (146), Expect = 5e-26 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 93081 TGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGC 93140 || ||| ||||| || ||||| || ||||| || ||||| | || || | || || | Sbjct 738468 TGAACAGCAAGCAGGCGAAGTCTGTGTGTAATCCCTCGTCCCTGGAGATGAGTTCGTTAC 738409 Query 93141 TGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTAC 93200 ||||||| | || || | ||| ||||| ||||| | ||| || || | || ||||||| Sbjct 738408 TGAATGTAAGTCCAGGCATCAGACCTCGCTTCTTCAACCAGAAAATGGCGGCGAAACTAC 738349 Query 93201 CAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGG 93260 |||| || || || ||||| || | ||||| || | ||| | |||||| || | ||| Sbjct 738348 CAGAGAAGAAGATTCCTTCAACAGAGGCAAAAGCGATAATTCTTTCGGCGAATGTAGCGT 738289 Query 93261 AATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTT 93320 || | | ||||| || | ||||| || || |||||||| | ||| | |||| Sbjct 738288 TTTTCGCGTTAATCCACTTGAGGGCCCAGTCTGCCTTTTTCTTCACGGCAGGGATGGTTT 738229 Query 93321 CGATAGCGTTAAATAGGTAATCTCGCTC 93348 |||||||||| || || | ||||||||| Sbjct 738228 CGATAGCGTTGAACAGTTTATCTCGCTC 738201 >seq6223 Length=1510710 Score = 123 bits (136), Expect = 3e-23 Identities = 86/97 (89%), Gaps = 2/97 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC--GGGA 126320 || ||||||||||||||||||||||||||| |||||||||| |||| ||| | | | || Sbjct 177753 ACCGTCAGGTTGGCCGAGTGGTCTAAGGCGTCAGATTTAAGCTCTGATTCTCGCAAGAGA 177812 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357 ||||||||||||||||||||||||||| |||||| || Sbjct 177813 GCGTGGGTTCGAACCCCACACCTGACAGATTATTTTT 177849 >seq6801 Length=1355208 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/105 (81%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGA 126320 |||||||||||||||||||||||||||||| ||||||||| ||| | || | Sbjct 898013 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGTGAGATTTAAGCTCTCATAATCGTAAGATT 898072 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA--TTATTATTGGAATT 126363 ||||||||||||||||||||||||||| | ||||| || |||| Sbjct 898073 GCGTGGGTTCGAACCCCACACCTGACAGATCTTATTTTTATAATT 898117 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 162737 AAAAAATCAGAATTACCTCTTGTGAGAATCGAACTCACGACAACCGGCGTATAAGACCGA 162796 |||||| ||| || |||| |||||| || ||||||||||| | || || ||||| Sbjct 869341 AAAAAAAGAGATTTGCCTCCTGTGAGGATTGAACTCACGACCCCTGGTTTACGAGACCAG 869400 Query 162797 TGCTCTAACCACTGAGCTAAAGAGGCTACA 162826 ||||||| ||||||||||||||||||| || Sbjct 869401 TGCTCTATCCACTGAGCTAAAGAGGCTTCA 869430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556812777716760