Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6057 154 3e-32 seq4046 84.2 4e-11 >seq6057 Length=130802 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 ||||||||||| | || | | |||| || || || || || || || || || ||| Sbjct 36449 TAATTTCCTCCCCTGAGCCTGAGAACCAGATGAAGAGTTGATTCCTTCTGAATATTGTAA 36508 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||| || || || ||||| || | ||||| || ||||| || | ||| || || || Sbjct 36509 TCGGACAGAGTTCTTCCATCCTCCAGTTGCTTTCCAGCGAAGATCAATCTCTGCTGATCT 36568 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 || ||||| ||||||||||| |||||||| ||||| ||| ||||||| | || | Sbjct 36569 GGGGGAATTCCTTCCTTGTCCTGAATCTTGGCCTTAACGTTCTCGATGCTATCACTAGCC 36628 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || |||| |||||||||||| || || | |||||||||||| |||||||| Sbjct 36629 TCGACCTCCAGGGTGATGGTTTTACCGGTTAAGGTCTTGACGAAGATCTGCAT 36681 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | | || | ||| || || || || || || || || |||||||| Sbjct 36683 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTGTAATCGGAC 36742 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | |||||| || ||||| || | ||| || || || || ||| Sbjct 36743 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGGGGA 36802 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| || ||||| ||||| ||| ||| ||| |||| | || || Sbjct 36803 ATTCCTTCCTTGTCCTGGATCTTGGCCTTAACGTTCTCAATGCTGTCACTAGCCTCGACC 36862 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| ||||| || | |||||||||||| |||||||| Sbjct 36863 TCCAGGGTGATGGTCTTTCCGGTCAAGGTCTTGACGAAGATCTGCAT 36909 Score = 89.7 bits (98), Expect = 9e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | | |||| || || || || || || ||||| || |||||||| Sbjct 36911 CCTCCTCTAAGCCTGAGAACCAGATGAAGAGTAGATTCCTTCTGGATATTGTAATCGGAC 36970 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | |||||| || ||||| || | ||| || || || || ||| Sbjct 36971 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 37030 Query 68355 ATGCCTTCCTTGTCTTGAA 68373 || ||||||||||| |||| Sbjct 37031 ATTCCTTCCTTGTCCTGAA 37049 Score = 84.2 bits (92), Expect = 4e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| | ||| | | || | ||| || || || || || || || |||||||| || Sbjct 39000 CCTCCTCTAAGCCTGAGAACAAGGTGAAGAGTAGATTCCTTCTGAATATTATAATCCGAC 39059 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || || ||||| || | |||||| || ||||| || | ||| || || || || ||| Sbjct 39060 AGAGTTCTTCCATCCTCCAGCTGCTTTCCAGCGAAGATCAATCTCTGCTGATCTGGAGGA 39119 Query 68355 ATGCCTTCCTTGTCTTGAA 68373 || ||||||||||| |||| Sbjct 39120 ATTCCTTCCTTGTCCTGAA 39138 >seq4046 Length=337920 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/93 (82%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGTGATGGT 68428 |||||||| ||||| || |||||||| ||| ||| | || ||||| | |||||| || Sbjct 168661 TGAATCTTGGCCTTCACATTCTCGATGGAGTC-GCTAGCCTCGACTTCGAGGGTGATCGT 168719 Query 68429 TTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||||||||||||||||||| |||||||| Sbjct 168720 CTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 168752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921542921588280