Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6057 104 2e-17 seq4046 87.8 1e-12 seq1779 86.0 4e-12 seq4668 84.2 2e-11 >seq6057 Length=130802 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||||||||| || || || || ||| || |||| || |||||||| Sbjct 42336 CAGCAGAGATTGATCTTTGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTAC 42277 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||||||||||||| |||| Sbjct 42276 AATATTCAGAAGGAATCTACTCTTCATCTGGT 42245 Score = 98.7 bits (108), Expect = 7e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||| ||||| || ||||| || ||| || |||| || |||||||| Sbjct 36564 CAGCAGAGATTGATCTTCGCTGGAAAGCAACTGGAGGATGGAAGAACTCTGTCCGATTAC 36505 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||||||| |||| Sbjct 36504 AATATTCAGAAGGAATCAACTCTTCATCTGGT 36473 Score = 95.1 bits (104), Expect = 9e-15 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||| ||||| || || || || ||| || |||| || |||||||| Sbjct 37020 CAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTAC 36961 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||| ||||||||||||||||||||| |||| Sbjct 36960 AATATCCAGAAGGAATCTACTCTTCATCTGGT 36929 Score = 93.3 bits (102), Expect = 3e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||| ||||| || || || || ||| || |||| || |||||||| Sbjct 36792 CAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGATTAC 36733 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||||||||||||||| Sbjct 36732 AATATTCAGAAGGAATCTACTCTTCA 36707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||| ||||| || || || || ||| || |||| || |||| ||| Sbjct 37608 CAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCCGACTAC 37549 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||||||| ||||||||| |||| Sbjct 37548 AATATTCAGAAGGAATCAACTCTTCATCTGGT 37517 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||| | ||||| ||||| || || || || ||| || |||| || | ||||| Sbjct 39109 CAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAGGATGGAAGAACTCTGTCGGATTAT 39050 Query 22011 AATATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||||||||||||||| Sbjct 39049 AATATTCAGAAGGAATCTACTCTTCA 39024 >seq4046 Length=337920 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | | || |||||| | ||||||||||| |||||||| ||| Sbjct 168575 GATAAGGAGGGAATCCCCCCAGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTTGAA 168516 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| | |||| | | |||||||| || ||||| |||||||| |||||| |||| Sbjct 168515 GATGGCAGAACTCTATCTGATTACAACATCCAGAAAGAATCTACCCTTCATCTGGT 168460 >seq1779 Length=2408633 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | || | | || |||||| | ||||| |||||||| || ||||| Sbjct 504952 GATAAGGAGGGAATTCCCCCAGATCAGCAGAGATTGATCTTCGCTGGCAAGCAGCTAGAG 504893 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || |||| | | ||||| |||||||||||||||||||| ||||| Sbjct 504892 GATGGAAGAACTCTATCTGATTATAATATTCAGAAGGAATCTACCCTTCA 504843 >seq4668 Length=1644770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 ||||| ||||| | ||| | | || |||||| | ||||| ||||| || || || || Sbjct 1192834 GATAAGGAGGGAATCCCTCCAGATCAGCAGAGATTGATCTTCGCTGGAAAGCAGCTGGAG 1192775 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || |||| | |||||||||| |||||||||||||| || ||||| |||| Sbjct 1192774 GATGGAAGAACTCTATCCGATTACAACATTCAGAAGGAATCCACCCTTCACTTGGT 1192719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358094688307246