Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17] 6,899 sequences; 494,890,867 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4046 181 2e-40 seq891 138 2e-27 >seq4046 Length=337920 Score = 181 bits (200), Expect = 2e-40 Identities = 349/512 (68%), Gaps = 2/512 (0%) Strand=Plus/Minus Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721 |||| ||| ||||| ||| | | ||| |||||||||||||||||||| || | | || Sbjct 122173 TCACGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGG 122114 Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781 ||| | ||| || || ||||| || || ||| |||||||| || || | ||| || | Sbjct 122113 AGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGT 122054 Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841 |||| || ||| |||||||||||||| | |||| | || |||||||| | |||| Sbjct 122053 TGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGG 121994 Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CT 244900 | | | | |||||| | | ||| || || ||| | | || | | ||| | Sbjct 121993 ATTCAATAATAGCATACCAGAGCTGCTGAGCTTTTACAGTCTT-CAAGACGCGTCCTTCC 121935 Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960 || || ||||| |||||||||||| ||||| ||||| | || || ||| Sbjct 121934 TTTTCATATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGG 121875 Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020 || | || ||||| |||||||| || || | ||| ||||||| ||||||||| Sbjct 121874 GACTGGTCAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGA 121815 Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080 || || ||||| | || | ||| || ||||| | || | ||| || ||| ||| Sbjct 121814 TCAGGAATCCACATAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTC 121755 Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140 ||| ||| ||||| || || || | || | |||||||| || | ||||| ||||| Sbjct 121754 TTCTTCAAATCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAAT 121695 Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172 || || || | ||| || |||||||| || || Sbjct 121694 GCTCCAGGTCTCTTATTTCCTCCCTGATCAAC 121663 >seq891 Length=807508 Score = 138 bits (152), Expect = 2e-27 Identities = 212/295 (72%), Gaps = 13/295 (4%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTGGGCGCTCAA 42667 |||||||| || || || || || |||||| | ||||| ||||| |||||||| ||||| Sbjct 738213 CTGTTCAACGCTATCGAAACCAT-CCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAA 738271 Query 42668 CTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 ||||| || || |||| || |||| ||| || | | || ||| || | || Sbjct 738272 GTGGATTAACGCGAAAA---ACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGT 738328 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGT 42783 || || ||||||||||| || |||||| |||| |||||| | ||| || |||| | Sbjct 738329 TGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCT 738388 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843 |||||| ||||| || ||| |||||||||||| |||||||||||| | || | | Sbjct 738389 -GATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAG 738447 Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898 |||| |||||| | |||||| || ||||| | |||||| |||||||| Sbjct 738448 ACTTCGCCTGCTTGCTGTTC---AGGCACCTGCAGAGGAAGCCCAGCAAGGAGCG 738499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944257762548240