Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Eurytemora_20affinis_20[genbank_20GCA_5F000591075.1_202014-03-17]
6,899 sequences; 494,890,867 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4046 181 2e-40
seq891 138 2e-27
>seq4046
Length=337920
Score = 181 bits (200), Expect = 2e-40
Identities = 349/512 (68%), Gaps = 2/512 (0%)
Strand=Plus/Minus
Query 244662 TCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGG 244721
|||| ||| ||||| ||| | | ||| |||||||||||||||||||| || | | ||
Sbjct 122173 TCACGAACATGTTGACGGCAATGGAGGCTAGGTTGCAGACGGCCACCTCATCAGGGGCGG 122114
Query 244722 TGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGAT 244781
||| | ||| || || ||||| || || ||| |||||||| || || | ||| || |
Sbjct 122113 AGTATTCGACGATTTCTGTGCACAGATTTGAGCATTTGATGGTTCCTAGATTCTGCTGGT 122054
Query 244782 TGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGG 244841
|||| || ||| |||||||||||||| | |||| | || |||||||| | ||||
Sbjct 122053 TGGATTTTCTGTTACAGGCGTCCTTGTACAACATGTACGGAGTTCCGGTCTCAATTTGGG 121994
Query 244842 CGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCT-CT 244900
| | | | |||||| | | ||| || || ||| | | || | | ||| |
Sbjct 121993 ATTCAATAATAGCATACCAGAGCTGCTGAGCTTTTACAGTCTT-CAAGACGCGTCCTTCC 121935
Query 244901 GCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG 244960
|| || ||||| |||||||||||| ||||| ||||| | || || |||
Sbjct 121934 TTTTCATATTTCTCATACAGAGCCTCGAACTCGTCTCCCCAAACCTCATGAAGTCCAGGG 121875
Query 244961 CACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGG 245020
|| | || ||||| |||||||| || || | ||| ||||||| |||||||||
Sbjct 121874 GACTGGTCAGGACACATTAGACTCCAATCTCCATCAGCCTCTACCCTCTTCATGAAGAGA 121815
Query 245021 TCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTC 245080
|| || ||||| | || | ||| || ||||| | || | ||| || ||| |||
Sbjct 121814 TCAGGAATCCACATAGCGTAGAACAGATCCCTAGCTCTGTTCTCCTCTTTACCATGATTC 121755
Query 245081 TTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGG 245140
||| ||| ||||| || || || | || | |||||||| || | ||||| |||||
Sbjct 121754 TTCTTCAAATCCAAGAACTCGAAAATATCTCCATGCCAGGGTTCAAGGTAGATAGCGAAT 121695
Query 245141 GCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC 245172
|| || || | ||| || |||||||| || ||
Sbjct 121694 GCTCCAGGTCTCTTATTTCCTCCCTGATCAAC 121663
>seq891
Length=807508
Score = 138 bits (152), Expect = 2e-27
Identities = 212/295 (72%), Gaps = 13/295 (4%)
Strand=Plus/Plus
Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCA-TCAAGAAGAAGGCGGACTGGGCGCTCAA 42667
|||||||| || || || || || |||||| | ||||| ||||| |||||||| |||||
Sbjct 738213 CTGTTCAACGCTATCGAAACCAT-CCCTGCCGTGAAGAAAAAGGCAGACTGGGCCCTCAA 738271
Query 42668 CTGGAT---CGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724
||||| || || |||| || |||| ||| || | | || ||| || | ||
Sbjct 738272 GTGGATTAACGCGAAAA---ACGCTACATTCGCCGAAAGAATTATCGCTTTTGCCTCTGT 738328
Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGT 42783
|| || ||||||||||| || |||||| |||| |||||| | ||| || |||| |
Sbjct 738329 TGAAGGAATCTTCTTCTCTGGTAGTTTCGCCGCCATTTTCTGGTTGAAGAAGCGAGGTCT 738388
Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGG 42843
|||||| ||||| || ||| |||||||||||| |||||||||||| | || | |
Sbjct 738389 -GATGCCTGGACTTACATTCAGTAACGAACTCATCTCCAGGGACGAGGGATTACACACAG 738447
Query 42844 ACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCG 42898
|||| |||||| | |||||| || ||||| | |||||| ||||||||
Sbjct 738448 ACTTCGCCTGCTTGCTGTTC---AGGCACCTGCAGAGGAAGCCCAGCAAGGAGCG 738499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944257762548240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |